MmuEX6053111 @ mm10
Exon Skipping
Gene
ENSMUSG00000022240 | Ctnnd2
Description
catenin (cadherin associated protein), delta 2 [Source:MGI Symbol;Acc:MGI:1195966]
Coordinates
chr15:30332010-30619253:+
Coord C1 exon
chr15:30332010-30332146
Coord A exon
chr15:30480782-30480894
Coord C2 exon
chr15:30619222-30619253
Length
113 bp
Sequences
Splice sites
3' ss Seq
TTTCGGTGTGTTTCTTTCAGGAA
3' ss Score
11.99
5' ss Seq
CAGGTACGG
5' ss Score
10.88
Exon sequences
Seq C1 exon
GAGCTATGCCTGTCCCAGACCAGCCTCCATCAGCCTCAGAGAAGAACAGCTCCTTGAGCCCAGGCTTAAACACCTCCAATGGTGATGGCTCTGAGACGGAAACCACCTCTGCTATCCTTGCCTCCGTCAAAGAACAG
Seq A exon
GAATTACAGTTTGAAAGGCTGACCCGAGAGCTGGAGGCTGAACGCCAGATCGTAGCCAGCCAGCTGGAGCGATGCAAGCTTGGCTCGGAGACAGGAAGCATGAGCAGTATCAG
Seq C2 exon
TTCAGCAGAGCAGTTTCACTGGCAGACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022240-'13-15,'13-10,16-15
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.913 A=0.459 C2=0.917
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTATGCCTGTCCCAGACC
R:
GTGTCTGCCAGTGAAACTGCT
Band lengths:
166-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types