HsaEX0017875 @ hg19
Exon Skipping
Gene
ENSG00000169862 | CTNND2
Description
catenin (cadherin-associated protein), delta 2 (neural plakophilin-related arm-repeat protein) [Source:HGNC Symbol;Acc:2516]
Coordinates
chr5:11412147-11732384:-
Coord C1 exon
chr5:11732248-11732384
Coord A exon
chr5:11565056-11565168
Coord C2 exon
chr5:11412147-11412181
Length
113 bp
Sequences
Splice sites
3' ss Seq
TGTTGATGGGTTTCTTTCAGGAA
3' ss Score
8.45
5' ss Seq
GAGGTACTA
5' ss Score
6.36
Exon sequences
Seq C1 exon
GAGCTATGCCTGTTCCAGACCAGCCTTCATCAGCCTCAGAGAAGACGAGTTCCCTGAGCCCCGGCTTAAACACCTCCAACGGGGATGGCTCTGAAACAGAAACCACCTCTGCCATCCTCGCCTCAGTCAAAGAACAG
Seq A exon
GAATTACAGTTTGAAAGGCTGACCCGAGAGCTGGAGGCTGAACGGCAGATCGTAGCCAGCCAGCTGGAGCGATGCAAGCTCGGATCCGAGACTGGCAGCATGAGCAGCATGAG
Seq C2 exon
TTCAGCAGAAGAGCAGTTTCAGTGGCAGTCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169862-'3-9,'3-7,6-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.930 A=0.729 C2=1.000
Domain overlap (PFAM):
C1:
PF034419=FAD_binding_7=PU(33.6=91.3)
A:
PF034419=FAD_binding_7=FE(29.6=100)
C2:
PF034419=FAD_binding_7=FE(9.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTATGCCTGTTCCAGACC
R:
TGTGACTGCCACTGAAACTGC
Band lengths:
170-283
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)