GgaEX1003122 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NG94]
Coordinates
chr2:77612096-77730866:+
Coord C1 exon
chr2:77612096-77612196
Coord A exon
chr2:77643866-77643978
Coord C2 exon
chr2:77730832-77730866
Length
113 bp
Sequences
Splice sites
3' ss Seq
GGTTTCATGTATTTTTTCAGGAA
3' ss Score
8.64
5' ss Seq
TAGGTAATG
5' ss Score
7.57
Exon sequences
Seq C1 exon
CGCCCCGGCGGGCTTTCGCCTCCTCCTCAAGTTTTGCCCCGCCGGCTGCCGCGAGAGGAAGCGGCGTGCCGTAGGGTGGACTCGGCGCGGGCTGCCCTCAG
Seq A exon
GAACTACAGTTTGAGAGACTGACTCGAGAGCTTGAGGCTGAACGTCAGATTGTAGCGAGCCAACTGGAGCGATGTAAACTTGGATCGGAAACTGGAAGCATGAGCAGCATTAG
Seq C2 exon
TTCAACAGAAGAGCAGTTTCACTGGCAAACGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014502-'1-6,'1-1,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.474 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
PF034419=FAD_binding_7=FE(30.1=100)
C2:
PF034419=FAD_binding_7=FE(9.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCGCCTCCTCCTCAAGTT
R:
TTGCGTTTGCCAGTGAAACTG
Band lengths:
123-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]