RnoEX0025208 @ rn6
Exon Skipping
Gene
ENSRNOG00000010649 | Ctnnd2
Description
catenin delta 2 [Source:RGD Symbol;Acc:620734]
Coordinates
chr2:83393282-83683536:+
Coord C1 exon
chr2:83393282-83393413
Coord A exon
chr2:83543696-83543808
Coord C2 exon
chr2:83683502-83683536
Length
113 bp
Sequences
Splice sites
3' ss Seq
TTTTGGTGTGTCTCTTTCAGGAA
3' ss Score
12.59
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
ATGCCTGTCCCAGACCAGCCTCCGTCAGCCTCTGAGAAGAACAGCTCCTTGAGCCCAGGCTTAAACACCTCCAATGGGGATGGCTCTGAGACAGAAACAACCTCTGCTATCCTTGCCTCCGTCAAAGAACAG
Seq A exon
GAATTACAGTTTGAAAGGCTGACCCGAGAGCTGGAGGCTGAACGCCAGATCGTGGCCAGCCAGCTGGAGAGATGCAAGCTTGGCTCCGAGACAGGAAGCATGAGCAGCATCAG
Seq C2 exon
TTCAGCAGGAGAGCAGTTTCATTGGCAGACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010649-'0-10,'0-3,7-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.909 A=0.632 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTCCCAGACCAGCCTC
R:
TGTGTCTGCCAATGAAACTGCT
Band lengths:
162-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]