RnoEX0025216 @ rn6
Exon Skipping
Gene
ENSRNOG00000010649 | Ctnnd2
Description
catenin delta 2 [Source:RGD Symbol;Acc:620734]
Coordinates
chr2:83543696-83684228:+
Coord C1 exon
chr2:83543696-83543808
Coord A exon
chr2:83683502-83683536
Coord C2 exon
chr2:83684112-83684228
Length
35 bp
Sequences
Splice sites
3' ss Seq
GTGTGTTCTTTTTCTTGCAGTTC
3' ss Score
10.81
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GAATTACAGTTTGAAAGGCTGACCCGAGAGCTGGAGGCTGAACGCCAGATCGTGGCCAGCCAGCTGGAGAGATGCAAGCTTGGCTCCGAGACAGGAAGCATGAGCAGCATCAG
Seq A exon
TTCAGCAGGAGAGCAGTTTCATTGGCAGACACAAG
Seq C2 exon
ATGGCCAAAAAGACATCGAAGATGAACTCACAACAGGCCTTGAGCTGGTGGACTCCTGCATCCGCTCTCTGCAGGAGTCAGGCATTCTTGACCCACAGGATTACTCCACAAGTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010649-'7-12,'7-10,8-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.632 A=1.000 C2=0.700
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGGAAGCATGAGCAGCAT
R:
AGAATGCCTGACTCCTGCAGA
Band lengths:
112-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]