DreEX0024904 @ danRer10
Exon Skipping
Gene
ENSDARG00000003779 | ctnnd2b
Description
catenin (cadherin-associated protein), delta 2b [Source:ZFIN;Acc:ZDB-GENE-070912-532]
Coordinates
chr2:30646281-30672134:-
Coord C1 exon
chr2:30672022-30672134
Coord A exon
chr2:30649115-30649149
Coord C2 exon
chr2:30646281-30646397
Length
35 bp
Sequences
Splice sites
3' ss Seq
CTCTGTCTTTACTCTTACAGTTC
3' ss Score
10.02
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GAGCTGCAGTTTGAGCGACTGACGAGAGAGTTGGAGGCTGAGAGGCAGATTGTTGCCACCCAGCTGGAGAGATGCAAGCTGGGATCTGAGACCGGAAGCATGAGCAGCATCAG
Seq A exon
TTCTGCAGATGAGAAGTTTCGCTGGAACAACCAAG
Seq C2 exon
ACGGACAGAAGGATATAGAGGAGGAGCTCACCACAGGCCTGGAGCTTGTAGATTCCTGCATCCGATCTCTTCAAGAGTCTGGGATTCTGGATTCACAGGAATTCACTGCAGGTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000003779_MULTIEX1-2/11=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.230 A=0.981 C2=0.400
Domain overlap (PFAM):
C1:
PF034419=FAD_binding_7=FE(30.1=100)
A:
PF034419=FAD_binding_7=FE(14.3=100)
C2:
PF034419=FAD_binding_7=PD(26.0=80.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGAGAGTTGGAGGCTGAGA
R:
CTGTGGTGAGCTCCTCCTCTA
Band lengths:
127-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]