MmuEX0013082 @ mm10
Exon Skipping
Gene
ENSMUSG00000022240 | Ctnnd2
Description
catenin (cadherin associated protein), delta 2 [Source:MGI Symbol;Acc:MGI:1195966]
Coordinates
chr15:30480782-30619939:+
Coord C1 exon
chr15:30480782-30480894
Coord A exon
chr15:30619222-30619253
Coord C2 exon
chr15:30619823-30619939
Length
32 bp
Sequences
Splice sites
3' ss Seq
GTGTGTTCTCTTTCTTGCAGTTC
3' ss Score
11.43
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GAATTACAGTTTGAAAGGCTGACCCGAGAGCTGGAGGCTGAACGCCAGATCGTAGCCAGCCAGCTGGAGCGATGCAAGCTTGGCTCGGAGACAGGAAGCATGAGCAGTATCAG
Seq A exon
TTCAGCAGAGCAGTTTCACTGGCAGACACAAG
Seq C2 exon
ATGGCCAAAAAGATATCGAAGATGAACTTACAACGGGCCTTGAGCTGGTGGACTCCTGTATCCGCTCTCTGCAGGAGTCAGGCATTCTGGACCCACAGGATTACTCCACAAGTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022240-'16-18,'16-15,18-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.459 A=0.917 C2=0.615
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000081728fB8353
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACAGGAAGCATGAGCAG
R:
CAGAATGCCTGACTCCTGCAG
Band lengths:
116-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types