HsaEX6097334 @ hg19
Exon Skipping
Gene
ENSG00000169862 | CTNND2
Description
catenin (cadherin-associated protein), delta 2 (neural plakophilin-related arm-repeat protein) [Source:HGNC Symbol;Acc:2516]
Coordinates
chr5:11411648-11565168:-
Coord C1 exon
chr5:11565056-11565168
Coord A exon
chr5:11412147-11412181
Coord C2 exon
chr5:11411648-11411764
Length
35 bp
Sequences
Splice sites
3' ss Seq
CTGTATTTTCTTTTTTACAGTTC
3' ss Score
10.14
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GAATTACAGTTTGAAAGGCTGACCCGAGAGCTGGAGGCTGAACGGCAGATCGTAGCCAGCCAGCTGGAGCGATGCAAGCTCGGATCCGAGACTGGCAGCATGAGCAGCATGAG
Seq A exon
TTCAGCAGAAGAGCAGTTTCAGTGGCAGTCACAAG
Seq C2 exon
ATGGTCAAAAAGATATCGAAGATGAGCTTACAACAGGTCTCGAGCTGGTGGACTCCTGTATTAGGTCACTACAGGAATCAGGAATACTTGACCCACAGGATTATTCTACAGGTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169862-'6-10,'6-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.729 A=1.000 C2=0.768
Domain overlap (PFAM):
C1:
PF034419=FAD_binding_7=FE(29.6=100)
A:
PF034419=FAD_binding_7=FE(9.6=100)
C2:
PF034419=FAD_binding_7=PD(25.6=80.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGGCAGATCGTAGCCAG
R:
ACCAGCTCGAGACCTGTTGTA
Band lengths:
123-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)