GgaEX1003123 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NG94]
Coordinates
chr2:77643866-77731853:+
Coord C1 exon
chr2:77643866-77643978
Coord A exon
chr2:77730832-77730866
Coord C2 exon
chr2:77731737-77731853
Length
35 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTTTTTCTTTGCAGTTC
3' ss Score
11.47
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
GAACTACAGTTTGAGAGACTGACTCGAGAGCTTGAGGCTGAACGTCAGATTGTAGCGAGCCAACTGGAGCGATGTAAACTTGGATCGGAAACTGGAAGCATGAGCAGCATTAG
Seq A exon
TTCAACAGAAGAGCAGTTTCACTGGCAAACGCAAG
Seq C2 exon
ATGGTCAGAAGGATATAGAAGATGAGCTCACTACAGGTCTGGAGCTGGTGGACTCCTGTATTAGGTCACTGCAAGAATCAGGGATACTTGATCCACAGGACTATTCAGCCAGTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014502-'6-7,'6-6,9-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.474 A=1.000 C2=0.700
Domain overlap (PFAM):
C1:
PF034419=FAD_binding_7=FE(30.1=100)
A:
PF034419=FAD_binding_7=FE(9.8=100)
C2:
PF034419=FAD_binding_7=PD(26.0=80.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGTCAGATTGTAGCGAGCC
R:
CCAGCTCCAGACCTGTAGTGA
Band lengths:
121-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]