HsaEX6097334 @ hg38
Exon Skipping
Gene
ENSG00000169862 | CTNND2
Description
catenin delta 2 [Source:HGNC Symbol;Acc:HGNC:2516]
Coordinates
chr5:11411536-11427376:-
Coord C1 exon
chr5:11427276-11427376
Coord A exon
chr5:11412035-11412069
Coord C2 exon
chr5:11411536-11411652
Length
35 bp
Sequences
Splice sites
3' ss Seq
CTGTATTTTCTTTTTTACAGTTC
3' ss Score
10.14
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GAACCTGGGAGGCAAAGGTTCCAGTGAGCCGAGATGGCACCACTGCACTTCAGCGTGGGTGACAGAGTGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAA
Seq A exon
TTCAGCAGAAGAGCAGTTTCAGTGGCAGTCACAAG
Seq C2 exon
ATGGTCAAAAAGATATCGAAGATGAGCTTACAACAGGTCTCGAGCTGGTGGACTCCTGTATTAGGTCACTACAGGAATCAGGAATACTTGACCCACAGGATTATTCTACAGGTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169862-'17-22,'17-21,18-22
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.748
Domain overlap (PFAM):
C1:
NA
A:
PF034419=FAD_binding_7=FE(9.7=100)
C2:
PF034419=FAD_binding_7=PD(25.8=80.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGGCACCACTGCACTTC
R:
ACCAGCTCGAGACCTGTTGTA
Band lengths:
120-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains