DreEX0024884 @ danRer10
Exon Skipping
Gene
ENSDARG00000062415 | ctnnd2a
Description
catenin (cadherin-associated protein), delta 2a [Source:ZFIN;Acc:ZDB-GENE-030616-60]
Coordinates
chr24:22276949-22388785:-
Coord C1 exon
chr24:22388668-22388785
Coord A exon
chr24:22299294-22299328
Coord C2 exon
chr24:22276949-22277142
Length
35 bp
Sequences
Splice sites
3' ss Seq
GTTCTTTTTCTTTTTTTCAGTTC
3' ss Score
10.65
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
AGGAAATCCAGTTTGAAAGATTAACTCGGGAGCTGGAGGCAGAGCGTCAGATAGTGGCGACTCAGTTGGAGCGATGCAAACTGGGGTCTGAGGCAGGTGGCAGTATGAGCAGCATCAG
Seq A exon
TTCAGCCGATGAGCAGTTTCGCTGGAATACCCAAG
Seq C2 exon
GACCGAGTCTGCTCTCTCAGAGCTCACTGCAGCTCAGCTCGAACCCAGAGGGCTCCCTCCAGTACTCCGCCAGCTACCACAGTAATCAGACCCTGGCCCTGAGCGACTGCTTGTCCGCACCGCAATCCCAGAAGCCTCAGCCCCCTCCACGCTCCAGCGGCCAGCCCGGAGGAGCCGTGCACAGCTACAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062415_MULTIEX1-1/16=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=0.920 C2=0.869
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCAGTATGAGCAGCATCA
R:
CTCAGGGCCAGGGTCTGATTA
Band lengths:
125-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]