DreEX0055923 @ danRer10
Exon Skipping
Gene
ENSDARG00000045331 | pkp4
Description
plakophilin 4 [Source:ZFIN;Acc:ZDB-GENE-120411-14]
Coordinates
chr6:12021650-12040978:-
Coord C1 exon
chr6:12040842-12040978
Coord A exon
chr6:12035016-12035128
Coord C2 exon
chr6:12021650-12021684
Length
113 bp
Sequences
Splice sites
3' ss Seq
TTTTTATGTCTTTTTGAAAGGAG
3' ss Score
5.67
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GGGAAATGCCTACTCCAAGGCAAAGCCCTGTGGAGGAAAGGGAGGTGTTGAGCGGCGAGGGAAGATCCAACAACAACAACATGGCGACTGATACCACCACCACCACCACCAACCTGCTGGCCTCGGTTAAAGAGCAG
Seq A exon
GAGCTCCAATTTGAACGGCTTACCAGAGAACTCGAGGAGGAGAGACAGATTGTAGCCAATCAGTTGGAGCGATGCAGGTTGGGGGCGGAGTCTCCAGGTGCTGCAAGTGACAG
Seq C2 exon
CTCTTCTGAGAAGTCTCTTCTGTGGAGATCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045331-'2-2,'2-1,5-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAATGCCTACTCCAAGG
R:
TGCAGATCTCCACAGAAGAGACT
Band lengths:
171-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]