Special

RnoEX0066481 @ rn6

Exon Skipping

Gene
Description
plakophilin 4 [Source:RGD Symbol;Acc:1307840]
Coordinates
chr3:45359636-45365709:+
Coord C1 exon
chr3:45359636-45359841
Coord A exon
chr3:45360448-45360713
Coord C2 exon
chr3:45365578-45365709
Length
266 bp
Sequences
Splice sites
3' ss Seq
GTATATGCATGTGAATGCAGGTA
3' ss Score
3.27
5' ss Seq
TAGGTTAGT
5' ss Score
5.5
Exon sequences
Seq C1 exon
CACCCACAGGTTCTTGTATCTGAGGATCATTCCCCACTTGGATGCTGGACACAAGTGACCCCTGTATAGAAGTAGAGATCAGACTTCCTGCTTTAGCTCTATGACTTATTGTTGCTGGACCTGGTTCACCACCAAATAAGAACTAGACTATTGCTTCAATGGACATACAGCTGCAGCTGGCTTTTTCTGAGCCACTTCTGTGTCAA
Seq A exon
GTACCTAGAGGGCTGCGGAAGACCGGAAGACCGTCAGCTCCCTGGAGCTGGATTCGCAGGTGCTAGTGAGCCTCCTGATGGGGCAGGAACCCAGAAAGGGACCTCAGCAAGAACAGCCAGTCCTCATAACAGCAGAGCCATCTCTCCAGACTCTTGATATTCTTATCTTGGTATTTGATAGCATGTTCCCCTACAAGAAATAAAATATGTCTGCAAAAAAAAAAACCTGAGAGTGGTTTCAAGTGCTCGGCTCTATTTCCCCATAG
Seq C2 exon
ATGTGCCAAATACTGGTGTAAGCAAACCTAGAGTTTCTGACACTGTTCATCCCAACAACTATCTCATCAGGACGGAGCCAGAGCAAGGGGCCCTCTACTCACCAGAGCAGACGTCTCTCCATGAAAGTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005504-'24-20,'24-19,25-20
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.429 A=1.000 C2=0.938
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NO


Main Inclusion Isoform:
ENSRNOT00000059246fB10806


Main Skipping Isoform:
ENSRNOT00000059246fB10807


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTTGGATGCTGGACACAA
R:
GAGAGACGTCTGCTCTGGTGA
Band lengths:
292-558
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]