RnoEX0066490 @ rn6
Exon Skipping
Gene
ENSRNOG00000005504 | Pkp4
Description
plakophilin 4 [Source:RGD Symbol;Acc:1307840]
Coordinates
chr3:45349289-45365709:+
Coord C1 exon
chr3:45349289-45349323
Coord A exon
chr3:45359636-45359841
Coord C2 exon
chr3:45365578-45365709
Length
206 bp
Sequences
Splice sites
3' ss Seq
AAATGCATATGTGTCTTAAGCAC
3' ss Score
2.29
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
CTCAACTGAAAAGTCATTTCCTTGGAGATCAACAG
Seq A exon
CACCCACAGGTTCTTGTATCTGAGGATCATTCCCCACTTGGATGCTGGACACAAGTGACCCCTGTATAGAAGTAGAGATCAGACTTCCTGCTTTAGCTCTATGACTTATTGTTGCTGGACCTGGTTCACCACCAAATAAGAACTAGACTATTGCTTCAATGGACATACAGCTGCAGCTGGCTTTTTCTGAGCCACTTCTGTGTCAA
Seq C2 exon
ATGTGCCAAATACTGGTGTAAGCAAACCTAGAGTTTCTGACACTGTTCATCCCAACAACTATCTCATCAGGACGGAGCCAGAGCAAGGGGCCCTCTACTCACCAGAGCAGACGTCTCTCCATGAAAGTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005504_MULTIEX1-5/6=3-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.429 C2=0.938
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000059246fB10810
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACTGAAAAGTCATTTCCTTGGA
R:
CCTCACTTTCATGGAGAGACGT
Band lengths:
166-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]