RnoEX0068258 @ rn6
Exon Skipping
Gene
ENSRNOG00000010477 | Pomt1
Description
protein-O-mannosyltransferase 1 [Source:RGD Symbol;Acc:620078]
Coordinates
chr3:11259913-11260836:+
Coord C1 exon
chr3:11259913-11260024
Coord A exon
chr3:11260591-11260656
Coord C2 exon
chr3:11260743-11260836
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCCTGTTTTGTCCAGCCC
3' ss Score
7.83
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
AGAACGCCCTAATCACTCAGTCCAGGCTCATGCTGTTGGAATCCATACTGATATTTTTTAACCTCTTGGCCGTGTTGTCCTATCTGAAGTTCTTCAACTCCCAAACACACAG
Seq A exon
CCCTTTCTCAGTGCACTGGTGGCTGTGGCTAATGCTGACCGGAGTCTCTTGTTCCTGTGCGGTTGG
Seq C2 exon
GATCAAGTACATGGGCATTTTCACCTACTTGCTCGTGCTCAGCATTGCAGCTGTGCATGCCTGGCACCTGATCGGAGACCAGACCTTGTCAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010477_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0236613=PMT=FE(14.9=100)
A:
PF0236613=PMT=FE(12.0=100)
C2:
PF0236613=PMT=FE(12.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGCTCATGCTGTTGGAAT
R:
AAGGTCTGGTCTCCGATCAGG
Band lengths:
178-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]