RnoEX0068610 @ rn6
Exon Skipping
Gene
ENSRNOG00000007673 | Ppig
Description
peptidylprolyl isomerase G [Source:RGD Symbol;Acc:620315]
Coordinates
chr3:55960173-55961178:+
Coord C1 exon
chr3:55960173-55960273
Coord A exon
chr3:55960327-55960624
Coord C2 exon
chr3:55961075-55961178
Length
298 bp
Sequences
Splice sites
3' ss Seq
GGAGCCGAAGCGGGTGGCTGGGC
3' ss Score
-16.38
5' ss Seq
GTGGTAGGT
5' ss Score
7.23
Exon sequences
Seq C1 exon
GCGCTTCGGAGGACCGGGCCCGGAGAAGAGAAGCCCGTGGCGGTGCAGGTGAGGGACGCGGAGGCGTCCGTCGGCGTGGCGTCATTTTCTGCAGACCTTGG
Seq A exon
GGCCGAGGTAACCGTCTTTCCGACGAGGTCTCTGAGCTATTCGCGCTCGGAAGGGTGGCCCCGGGGACCGCGGAGCGGCCTGTGGCACCGTAGGGGCTAGGCAGCTTGCAGCCGAGTCCCGGGGCGCAGGAAGCAGATCTTCCTCTCCAACCCCCGCCCTCCCTGCTCGGCGCACACCTCCTCCCTGACGCATTTTGCCGCACAAGCTGTAATATGGCGGCAGCGACAGCGGCCTCGGCTCTCGGGAGCTAGGTTCTTTTGGATGCTTCCAAACCGAGAGACTGAGCGCTGCAACGTG
Seq C2 exon
GAGTACATTCCTTGGGCCATGAGACGCTCTCTTTTTTGTTTGTTTTTGATCACCAGTACATCTAAGAAGTAATAGAGTGTGGAGCTAAATCCAGAAAGAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007673-'1-1,'1-0,2-1
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGCCCGGAGAAGAGAA
R:
ATTCTTTCTGGATTTAGCTCCACACT
Band lengths:
188-486
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]