RnoINT0115963 @ rn6
Intron Retention
Gene
ENSRNOG00000007673 | Ppig
Description
peptidylprolyl isomerase G [Source:RGD Symbol;Acc:620315]
Coordinates
chr3:55960067-55961178:+
Coord C1 exon
chr3:55960067-55960220
Coord A exon
chr3:55960221-55961074
Coord C2 exon
chr3:55961075-55961178
Length
854 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TCGGTTTGATTTCTTAACAGGAG
3' ss Score
7.51
Exon sequences
Seq C1 exon
TGACGTACTTCCGGCGCGACATTTTCCCTCCACGCCTGGACTGGGCTGTGGGGGAGGGAGGCGGTTAGTGGGCTTTAGCGCCTTTCCCGACGGCGGTAGATTTGAAGCGCTTCGGAGGACCGGGCCCGGAGAAGAGAAGCCCGTGGCGGTGCAG
Seq A exon
GTGAGGGACGCGGAGGCGTCCGTCGGCGTGGCGTCATTTTCTGCAGACCTTGGGTACGAGAGCGGGAAGGGCCCAGGGCGAGGGGCGGAGCCGAAGCGGGTGGCTGGGCCGAGGTAACCGTCTTTCCGACGAGGTCTCTGAGCTATTCGCGCTCGGAAGGGTGGCCCCGGGGACCGCGGAGCGGCCTGTGGCACCGTAGGGGCTAGGCAGCTTGCAGCCGAGTCCCGGGGCGCAGGAAGCAGATCTTCCTCTCCAACCCCCGCCCTCCCTGCTCGGCGCACACCTCCTCCCTGACGCATTTTGCCGCACAAGCTGTAATATGGCGGCAGCGACAGCGGCCTCGGCTCTCGGGAGCTAGGTTCTTTTGGATGCTTCCAAACCGAGAGACTGAGCGCTGCAACGTGGTAGGTGGGACGTTTGGTTGGGGAAGGGGGAGGCGCAGCGCGAGGGCCTGTCAGGTTAGGGTTAGGGAGGGACGGGCTCAGAGCCAGAATCACCGGGAATAAAATCGACAACGAGCTGTCCTCCTCCGACCTTTTCCACTGGTAGGACAGCGGCTGTCCTGCATACACCTAAGTGACACAGGCCCCTGATGTTAAGGATACTTCTAAAACTCAAGTGTGAGATGTGAATCTTAGGTCTCTAGAAGTTTTCCCGTGTTCCTGTGCAACTGGAAGCGGCCGGGCCTTTGGGGAGGATTCCGCTTAGGAGAAGATGGTTTCTGAACCGGGTTCGCCTTTAGGAGAAACGTACTGATTTGTTCCGTATTTACTGTGATGTCGAACAAAGTCAACCTTACCCGGCAAAAATATCCAGAAGTACTACCTTGTGCGCTCGGTTTGATTTCTTAACAG
Seq C2 exon
GAGTACATTCCTTGGGCCATGAGACGCTCTCTTTTTTGTTTGTTTTTGATCACCAGTACATCTAAGAAGTAATAGAGTGTGGAGCTAAATCCAGAAAGAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007673:ENSRNOT00000010216:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACTTCCGGCGCGACATTTT
R:
CTTATTCTTTCTGGATTTAGCTCCAC
Band lengths:
254-1108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]