RnoEX0070335 @ rn6
Exon Skipping
Gene
ENSRNOG00000033266 | Prss30
Description
protease, serine, 30 [Source:RGD Symbol;Acc:735142]
Coordinates
chr10:13350638-13352371:-
Coord C1 exon
chr10:13351891-13352371
Coord A exon
chr10:13350917-13350943
Coord C2 exon
chr10:13350638-13350785
Length
27 bp
Sequences
Splice sites
3' ss Seq
AACCTTCTCTTGTATTTCAGGGG
3' ss Score
9.94
5' ss Seq
CAGGTAACG
5' ss Score
10.52
Exon sequences
Seq C1 exon
GCTCCTAGTTCTTAAATAGGGTTGGCCAAGAGAGGCCCGGGAGCCACAGTATTGATAAGGGAACCTGGGCTTAGGTGTTCCTCTCTCAGCTCTGAGTTCGGTGTGGGGCCAGGGAGGGCAGATTTTCCTTGGTAGAGCCCTGGGTCTCCTAGACAGAGTGGGTAAAGCAACGGGGTCCCCACCTTCCTGAAGAATGGGTGAGACTTCCCTATGTTAACCTCACAGGCGGACTGACAGACAGCTCCTGTCACCGCTGGCTCCTGACCTTTACCAAACCAAGTCCCTGGAACTGCAGAACAGGAGGCTGACTGGGCGGGTCCTGTCGGGTAATTGGGTTCCAGTTTGATTGCCTCTAAACACTGAAATGCAACCCTCCCCTAGATGCTTCAGGGACTCTGACCCCACTGTGCCGTGGACCAGAGAGGAGCCATGGAGTCCTGGGCAAGGTGCATTTTTCTTCTCTTGCTGCAGATCCTGACAG
Seq A exon
GGGGACGTGGAGATATATTGCATTCAG
Seq C2 exon
GTGCTGGGAAGATTGTGGGTGGCCAAGATGCCCCGGAAGGACGATGGCCTTGGCAAGTCAGCCTGAGGACAGAGAAAGAGGGCCACATATGCGGGGGCTCCCTCATTCACGAGGTGTGGGTGCTCACGGCTGCCCACTGCTTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033266-'0-3,'0-1,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0008921=Trypsin=PU(19.1=90.0)
Main Skipping Isoform:
ENSRNOT00000034340fB11466
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTAGATGCTTCAGGGACT
R:
CACCCACAATCTTCCCAGCAC
Band lengths:
128-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]