MmuEX1020985 @ mm10
Exon Skipping
Gene
ENSMUSG00000024124 | Prss30
Description
protease, serine 30 [Source:MGI Symbol;Acc:MGI:1353645]
Coordinates
chr17:23973577-23975230:-
Coord C1 exon
chr17:23975129-23975230
Coord A exon
chr17:23974220-23974246
Coord C2 exon
chr17:23973577-23973848
Length
27 bp
Sequences
Splice sites
3' ss Seq
AACCTTCTCTTGTTTTTTAGGGG
3' ss Score
10.75
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
AGATATTTCAAGGACTCTAACCCCACTGCGTTGTGGACCGGAGAGGAGCCATGGAGTCCCGGGCAAGGTGCATCTTTCTTCTTTTGCTGCAGATCCTGACAA
Seq A exon
GGGCACGTGGAGATATATTGCCCTCAG
Seq C2 exon
GTCTCTGAACCCTAGCTTCTACCATGTGAAGGTTGGAGGGCTGACACTTTCCCTTCTGGAACCCCACTCAACTTTAGTGGCCGTGAGGAACATCTTCGTGCATCCCACCTACCTCTGGGCAGATGCGTCTAGCGGAGACATTGCCCTGGTGCAGCTGGATACTCCTCTGCGGCCCTCTCAGTTCACTCCTGTCTGCCTCCCAGCAGCCCAGACTCCTCTCACCCCTGGGACTGTCTGCTGGGTGACAGGCTGGGGAGCCACCCAGGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024124_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0008921=Trypsin=FE(38.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGGAGCCATGGAGTCCC
R:
AGAAGGGAAAGTGTCAGCCCT
Band lengths:
119-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types