HsaEX1029706 @ hg38
Exon Skipping
Gene
ENSG00000172460 | PRSS30P
Description
protease, serine, 30 pseudogene [Source:HGNC Symbol;Acc:HGNC:28753]
Coordinates
chr16:2841163-2841848:-
Coord C1 exon
chr16:2841680-2841848
Coord A exon
chr16:2841573-2841599
Coord C2 exon
chr16:2841163-2841328
Length
27 bp
Sequences
Splice sites
3' ss Seq
TTTGCTCTCTTGCTTTCCAGGGG
3' ss Score
11.58
5' ss Seq
CAGGTACCG
5' ss Score
10.05
Exon sequences
Seq C1 exon
CACAGAGGGCTCCAGCGTGATTGCCACTGGTTAATGACCTGCCACCCCCGCCCCCCCAACCTCTGGTGCCGTCCAAGGACTCTGACCCCAGTGCAGTGTCTGTAGGGAAGAGGAGCCATGGGGCTTCGGGCAGGCCCCATCCTGCTTCTGCTGCTGTGGCTGCTGCCAG
Seq A exon
GGGCCCATTGGGATGTGCTGCCTTCAG
Seq C2 exon
AATGCGGCCACTCCAAGGAGGCCGGGAGGATTGTGGGAGGCCAAGACACCCAGGAAGGACGCTGGCCGTGGCAGGTTGGCCTGTGGTTGACCTCAGTGGGGCATGTATGTGGGGGCTCCCTCATCCACCCACGCTGGGTGCTCACAGCCGCCCACTGCTTCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172460-'4-4,'4-3,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAGGGAAGAGGAGCCATGG
R:
GTGTCTTGGCCTCCCACAATC
Band lengths:
118-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains