HsaEX1029707 @ hg38
Exon Skipping
Gene
ENSG00000172460 | PRSS30P
Description
protease, serine, 30 pseudogene [Source:HGNC Symbol;Acc:HGNC:28753]
Coordinates
chr16:2839568-2841848:-
Coord C1 exon
chr16:2841680-2841848
Coord A exon
chr16:2841163-2841328
Coord C2 exon
chr16:2839568-2839931
Length
166 bp
Sequences
Splice sites
3' ss Seq
ACCCGCCCATCCCTCTGCAGAAT
3' ss Score
11.53
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
CACAGAGGGCTCCAGCGTGATTGCCACTGGTTAATGACCTGCCACCCCCGCCCCCCCAACCTCTGGTGCCGTCCAAGGACTCTGACCCCAGTGCAGTGTCTGTAGGGAAGAGGAGCCATGGGGCTTCGGGCAGGCCCCATCCTGCTTCTGCTGCTGTGGCTGCTGCCAG
Seq A exon
AATGCGGCCACTCCAAGGAGGCCGGGAGGATTGTGGGAGGCCAAGACACCCAGGAAGGACGCTGGCCGTGGCAGGTTGGCCTGTGGTTGACCTCAGTGGGGCATGTATGTGGGGGCTCCCTCATCCACCCACGCTGGGTGCTCACAGCCGCCCACTGCTTCCTGAG
Seq C2 exon
GGTGACTCCGGGGGGCCGCTGGTCTGCCCCATCAATGATACGTGGATCCAGGCCGGCATTGTGAGCTGGGGATTCGGCTGTGCCCGGCCTTTCCGGCCTGGTGTCTACACCCAGGTGCTAAGCTACACAGACTGGATTCAGAGAACCCTGGCTGAATCTCACTCAGGCATGTCTGGGGCCCGCCCAGGTGCCCCAGGATCCCACTCAGGCACCTCCAGATCCCACCCAGTGCTGCTGCTTGAGCTGTTGACCGTATGCTTGCTTGGGTCCCTGTGAACCATGAGCCATGGAGTCCGGGATCCCCTTTCTGGTAGGATTGATGGAATCTAATAATAAAAACTGTAGGTTTTTTATGTGTATTTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172460-'4-7,'4-4,7-7
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAGGGAAGAGGAGCCATGG
R:
CCCAGACATGCCTGAGTGAGA
Band lengths:
246-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains