HsaINT0132971 @ hg38
Intron Retention
Gene
ENSG00000172460 | PRSS30P
Description
protease, serine, 30 pseudogene [Source:HGNC Symbol;Acc:HGNC:28753]
Coordinates
chr16:2839568-2841328:-
Coord C1 exon
chr16:2841163-2841328
Coord A exon
chr16:2839932-2841162
Coord C2 exon
chr16:2839568-2839931
Length
1231 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CCTCCCTCTCTCTCCCCCAGGGT
3' ss Score
13.28
Exon sequences
Seq C1 exon
AATGCGGCCACTCCAAGGAGGCCGGGAGGATTGTGGGAGGCCAAGACACCCAGGAAGGACGCTGGCCGTGGCAGGTTGGCCTGTGGTTGACCTCAGTGGGGCATGTATGTGGGGGCTCCCTCATCCACCCACGCTGGGTGCTCACAGCCGCCCACTGCTTCCTGAG
Seq A exon
GTGAGTGGCGCTGGGTGGGGGTGCTCCTCACCCCTCCCCTTGGCGGCTGCCTGCAGTGGGCCGTGTTTCCATTCCCCTCCCAGGTCTGAGGATCCCGGGCTCTACCATGTTAAAGTCGGAGGGCTGACACCCTCACTTTCAGAGCCCCACTCGGCCTTGGTGGCTGTGAGGAGGCTCCTGGTCCACTCCTCATACCATGGGACCACCACCAGCGGGGACATTGCCCTGATGGAGCTGGACTCCCCCTTGCAGGCCTCCCAGTTCAGCCCCATCTGCCTCCCAGGACCCCAGACCCCCCTCGCCATTGGGACCGTGTGCTGGGTAAACGGGCTGGGGGTCCACTCAGGAGAGGGGGAAGGGGAATATGCACTCACCAGCCCCTACTCCTAGTCAGGGAGGACAAGCCCAGGGACCACGCAGAGCCAGCCTGAGTGGTCTCCACAGACGTTGGTCTGCGTGTTTATCTCCTCTCCCCTCCCACCCCACCCTGAAGCTGGGAACACTTGGGGCCAGGACCCATGCTGTCCAGACTGTGGGACTCCCCTTGGCCAAGGTGACCACCATATTGGATTTTGGGGATCTTGAGCCAGTGTCCAGGATTGTGCCCGTGTTGGGATGAATAAGCCAAGGCTAAGAGGTCATGAGATTAGCCAGGGTCATGGGAGAGGATCTGGGCTTGAGCCCTGCTCCCTGACCCCACTGCCTCCTGGTTTGGGAGTTGAGAAGAGCAGGGTGGGTGGGCAGAGAAGAGGTAGGAGGTGCAGGCTGCCACCATCACAGGTGAGAGGGCAGAGGCTCACCTGATGGGGACGAGGCTTGAGGTGGGCTCAGGCTGGCCCCCACATCACATCCAGCCCTGGCGAGTGTCCTTCAGGAGGTGGCTGTGCCCCTCCTGGACTCGAACATGTGTGAGCTGATGTACCACCTAGGAGAGCCCAGCCTGGCTGGCCAGCGCCTCATCCAGGACGACATGCTCTGTGCTGGCTCTGTCCAGGGCAAGAAAGACTCCTGCCAGGTGACTGCAGCTCCTGGTCACCCCATCCAGTTGTGTGGGCCCTTTAGGCTCACCCTGTCCTGGACTTTCTCCCCATGTCCCACACCTCAGGGTCTCCAGAGGGACCAGAGTCCTTGCCTAGCTCCTTGGCCTCAGCAGCAGATTCTCGAAGGCACTTGGGGCCCAGGTGTCTCCCTCAATGCAGACCTCATGGGGCCCTCCCTCTCTCTCCCCCAG
Seq C2 exon
GGTGACTCCGGGGGGCCGCTGGTCTGCCCCATCAATGATACGTGGATCCAGGCCGGCATTGTGAGCTGGGGATTCGGCTGTGCCCGGCCTTTCCGGCCTGGTGTCTACACCCAGGTGCTAAGCTACACAGACTGGATTCAGAGAACCCTGGCTGAATCTCACTCAGGCATGTCTGGGGCCCGCCCAGGTGCCCCAGGATCCCACTCAGGCACCTCCAGATCCCACCCAGTGCTGCTGCTTGAGCTGTTGACCGTATGCTTGCTTGGGTCCCTGTGAACCATGAGCCATGGAGTCCGGGATCCCCTTTCTGGTAGGATTGATGGAATCTAATAATAAAAACTGTAGGTTTTTTATGTGTATTTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172460:ENST00000506153:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCTCAGTGGGGCATGTAT
R:
CCCAAGCAAGCATACGGTCAA
Band lengths:
346-1577
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains