HsaINT0132971 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr16:2889574-2892752:-
Coord C1 exon
chr16:2890149-2892752
Coord A exon
chr16:2889933-2890148
Coord C2 exon
chr16:2889574-2889932
Length
216 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACT
5' ss Score
6.6
3' ss Seq
CCTCCCTCTCTCTCCCCCAGGGT
3' ss Score
13.28
Exon sequences
Seq C1 exon
AGCCCACCGGAAGTTTAGCGAACCACCCTCAACCTCCGGAAGAGCGCGGGAAGTTTGTCGGAAACGGACAGAAAGGAGTCCCTGCGACCGCGTAGCCTCCTGCAGCGCCCCCTGTTGGCAGAGTCGTAGCGAGGCCGAGATGAGGTCCGTGACGTGGCTGCGTGAGCATCCCGGCTGCCTGTGGATGAGTGGGCGTGGGGCTGAGAGGCGACAACAGTGGGGAGCTTCCTCAGCGATCCTGGGCTTCTCGGGTCAGGCCAACTTCAGTCCGGGCTGGAGGCCGTGCACAACACCAAGCGCATGGTGGGGTCCTCAGCTGCCTCGGGACTGGCTCCGCCTCTGCCCCTGGCCCTGGGATGGGGGCCAAAGGTTTTGGGCAGTGGCAGCAGCAGGAGGAAGTAGCACCTGGAAAACGTGTCTCCTGAGTCGACCCTTCCTGTCTGGGGGGGCCGAACCCTGGCTGTCTTTGTTCCCATAGCAACGAATAGGGCTCCCCTATGTTCCAGCCCCTTAGATACGGTGTGCCCCAGGAGGGCTCTGCAGGAGCTACAGGTCCTTCTGGTGGGAAGGGAGGCGGGAGGTGGGCTGGGGCAGCCCGGCTGGCCTGTGTGGAGACATCACACTTCCTGGTTGGGGACAGGGTGAAGAGGGTTGGTCCCCACCTCTGCCTTGAGCAGAGCTTCTAGTGGGTGAAGCAGTGGGGATCTCCTGCCTGCCGGAAGGATGGGTGGGGCTTCCACATCGCAGCCCAGTAGGGTGGACTGACCGGTCTTCTGACCTCTGGCTCCTTGGAGGGACTGGCCTGAGGTGGGCCCTGGCATCCCCAGCCTCCTCTAAACCACCTCCCTGGAACATGCGGGACAGGAGCCCAAGCGGCATCTGAGGAGGGCGGGTTCTGCCAGGCACAGAGGGCTCCAGCGTGATTGCCACTGGTTAATGACCTGCCACCCCCGCCCCCCCAACCTCTGGTGCCGTCCAAGGACTCTGACCCCAGTGCAGTGTCTGTAGGGAAGAGGAGCCATGGGGCTTCGGGCAGGCCCCATCCTGCTTCTGCTGCTGTGGCTGCTGCCAGGTAAGGGATGCGCCTCTGTCTTCTCCTCCCTCCCATCCCCTGCCAGCCTGTGTGCCCCCCTTTGCTCTCTTGCTTTCCAGGGGCCCATTGGGATGTGCTGCCTTCAGGTACCGTAGACATCTCATCCCTGCACTCAAACAGCCCCTACTCCTGGCCAGGGAGGACTGGCCCCAGGGGACATGCAGAGGCCCTTGGCCCTGGGAGCCTCATCCCTGGACATCAAGGGCAGAGGAATGTCAGAAGGGATGTCAGAAGGGCAGAGGGATGTTAGGGTAAAGAGTCAGACCGGGAGGGATGGGCTTTCTGAGAGGGAATAAAGCTGAGGTCTCCCACCCGCCCATCCCTCTGCAGAATGCGGCCACTCCAAGGAGGCCGGGAGGATTGTGGGAGGCCAAGACACCCAGGAAGGACGCTGGCCGTGGCAGGTTGGCCTGTGGTTGACCTCAGTGGGGCATGTATGTGGGGGCTCCCTCATCCACCCACGCTGGGTGCTCACAGCCGCCCACTGCTTCCTGAGGTGAGTGGCGCTGGGTGGGGGTGCTCCTCACCCCTCCCCTTGGCGGCTGCCTGCAGTGGGCCGTGTTTCCATTCCCCTCCCAGGTCTGAGGATCCCGGGCTCTACCATGTTAAAGTCGGAGGGCTGACACCCTCACTTTCAGAGCCCCACTCGGCCTTGGTGGCTGTGAGGAGGCTCCTGGTCCACTCCTCATACCATGGGACCACCACCAGCGGGGACATTGCCCTGATGGAGCTGGACTCCCCCTTGCAGGCCTCCCAGTTCAGCCCCATCTGCCTCCCAGGACCCCAGACCCCCCTCGCCATTGGGACCGTGTGCTGGGTAAACGGGCTGGGGGTCCACTCAGGAGAGGGGGAAGGGGAATATGCACTCACCAGCCCCTACTCCTAGTCAGGGAGGACAAGCCCAGGGACCACGCAGAGCCAGCCTGAGTGGTCTCCACAGACGTTGGTCTGCGTGTTTATCTCCTCTCCCCTCCCACCCCACCCTGAAGCTGGGAACACTTGGGGCCAGGACCCATGCTGTCCAGACTGTGGGACTCCCCTTGGCCAAGGTGACCACCATATTGGATTTTGGGGATCTTGAGCCAGTGTCCAGGATTGTGCCCGTGTTGGGATGAATAAGCCAAGGCTAAGAGGTCATGAGATTAGCCAGGGTCATGGGAGAGGATCTGGGCTTGAGCCCTGCTCCCTGACCCCACTGCCTCCTGGTTTGGGAGTTGAGAAGAGCAGGGTGGGTGGGCAGAGAAGAGGTAGGAGGTGCAGGCTGCCACCATCACAGGTGAGAGGGCAGAGGCTCACCTGATGGGGACGAGGCTTGAGGTGGGCTCAGGCTGGCCCCCACATCACATCCAGCCCTGGCGAGTGTCCTTCAGGAGGTGGCTGTGCCCCTCCTGGACTCGAACATGTGTGAGCTGATGTACCACCTAGGAGAGCCCAGCCTGGCTGGCCAGCGCCTCATCCAGGACGACATGCTCTGTGCTGGCTCTGTCCAGGGCAAGAAAGACTCCTGCCAG
Seq A exon
GTGACTGCAGCTCCTGGTCACCCCATCCAGTTGTGTGGGCCCTTTAGGCTCACCCTGTCCTGGACTTTCTCCCCATGTCCCACACCTCAGGGTCTCCAGAGGGACCAGAGTCCTTGCCTAGCTCCTTGGCCTCAGCAGCAGATTCTCGAAGGCACTTGGGGCCCAGGTGTCTCCCTCAATGCAGACCTCATGGGGCCCTCCCTCTCTCTCCCCCAG
Seq C2 exon
GGTGACTCCGGGGGGCCGCTGGTCTGCCCCATCAATGATACGTGGATCCAGGCCGGCATTGTGAGCTGGGGATTCGGCTGTGCCCGGCCTTTCCGGCCTGGTGTCTACACCCAGGTGCTAAGCTACACAGACTGGATTCAGAGAACCCTGGCTGAATCTCACTCAGGCATGTCTGGGGCCCGCCCAGGTGCCCCAGGATCCCACTCAGGCACCTCCAGATCCCACCCAGTGCTGCTGCTTGAGCTGTTGACCGTATGCTTGCTTGGGTCCCTGTGAACCATGAGCCATGGAGTCCGGGATCCCCTTTCTGGTAGGATTGATGGAATCTAATAATAAAAACTGTAGGTTTTTTATGTGTA
VastDB Features
Vast-tools module Information
Secondary ID
-PRSS30P:NR_026864:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAGAAAGACTCCTGCCAG
R:
CATGGTTCACAGGGACCCAAG
Band lengths:
303-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)