RnoINT0118709 @ rn6
Intron Retention
Gene
ENSRNOG00000033266 | Prss30
Description
protease, serine, 30 [Source:RGD Symbol;Acc:735142]
Coordinates
chr10:13348307-13349544:-
Coord C1 exon
chr10:13349384-13349544
Coord A exon
chr10:13349214-13349383
Coord C2 exon
chr10:13348307-13349213
Length
170 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACA
5' ss Score
5.49
3' ss Seq
CCCTCTTCCTTCTCCTTCAGGGT
3' ss Score
13.27
Exon sequences
Seq C1 exon
AGCTGGCGAGTGTCCTCCAGGAGTTAGCTGTGCCTCTCTTGGACTCAGAGGACTGTGAAAGGATGTACCACATCGGGGAGACCAGCCTGTCAGGGAAGAGAGTCATCCAGTCAGACATGCTCTGTGCCGGCTTTGTAGAAGGCCAGAAAGACTCCTGCCAG
Seq A exon
GTGACAACAGCCCTCTGGGTCTCCCTGGCACTCCTGTCACGCTGTCTGGGTTCATGTCCCACGTCCCAGGGAATCTAGGAACACCGGAGTTCTCTCCTAGGCTCTTTGGCCTGGCCAGAGGGTGTTTTAAAATGTTTTTTCTTGACTGGGCCCTCTTCCTTCTCCTTCAG
Seq C2 exon
GGTGACTCTGGGGGCCCACTCGTCTGTGCCATCAATAGTTCTTGGATCCAGGTTGGGATCACCAGCTGGGGTATTGGCTGTGCTCGGCCAAACAAGCCTGGTGTCTATACTCGGGTGCCAGACTACGTAGACTGGATTCAGAGAACCCTGGCGGAGAACCACTCTGATGCCTACGGATGCCGCTCCAGAGCCTCTGGGGCATATCCAGCACTGCTGCTGGTGTTGCTGGCATTTGCCTTGCCAGAGTCCCTGTGAATCGTGAGCTCTAGAGTTCTGGATCCTCTTCTGCTGGGCTTGGAGACTCAGGAGCTCAAAATAGACACTGAGAAAATGAACCTGGAATGGAGGTCTTGCAGGTGTCAGCCTGGGAGGTTTGGAGGCCGCAGTGACTCACAGAGCTTAAGGACATAGTAATTCGGACCACAGGGACACATCCTATCAAAGTCAAGCAGCCACCTACATGTCACTTAACACAGGCCTGGTCACGTGTCAGCTCTACTTGGACCAACTCTTTTTTTGGTCACACAACAGTGCTGCAGTGGGGAAGTAGAGATACTCAGAGAGGGCATGCGAGCTTCCTAAGGTCACACAGCTAGCTGCTAGGGTAGAATCTCTATTAAACAGGCATGGATGGTCTATGCTCTAGCCTAGAGGGAAGCCTCACTGTATGGCCCATGCTGGCCTCAGCCTCCCAAATGTATCTTTTAAAGACACGCATCACCACACTTGGCTTCTGTTCTTCACTCATAACGCACCATTGTTCTGGGAGAAAAGAATTCCTTTGACATGGAACCGGAAAGGTGGCCTAGCAATTAAGAGACTTCCAGAGCACCAGCGCTTACAGCGGCAGGAGGTCCTCTGAGGTCATACACACATGATTCGCAAACACTCGCACAATTAAAAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033266:ENSRNOT00000034340:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.5=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.1=52.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTCTCTTGGACTCAGAGG
R:
ACCCGAGTATAGACACCAGGC
Band lengths:
247-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]