BtaINT0118730 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040394 | PRSS27
Description
protease, serine 27 [Source:HGNC Symbol;Acc:HGNC:15475]
Coordinates
chr25:2126944-2127859:-
Coord C1 exon
chr25:2127690-2127859
Coord A exon
chr25:2127268-2127689
Coord C2 exon
chr25:2126944-2127267
Length
422 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
TACCTCTGCTTCGGCCGCAGGGA
3' ss Score
8.25
Exon sequences
Seq C1 exon
ACAGCCTGCCCAAACCCCGGACCCTGCAGAAGCTTGCCGTGCCCATCATCAGCACGCCCAAGTGCAACCTGCTCTACAGCAAGGATGCAGAGTCCGGCTTCCAGCCCAGAACCATCAAGGACGACATGCTGTGTGCGGGCTTCGCTGAGGGCAAGAGGGACGCCTGCAAG
Seq A exon
GTGGGCACTGGGGCGGGGTGGGCCGAGGCTGAGCCCTAGTGCCTGGGCCCCAGGCGGAAACCAGCCCACCTGGGACAAGGGACAAGGCCCAGGAGGTGGACCTGCAGGGCCCAGACCAGAGCTATGCATTCGACCAGCTGGGAAAGCAGGTTCCTGGGTTCTACCTGGGGGAGTCAGCGGGTCTGTGGCGGGACTCAGGAAGCTGCATCTTTAAGACACTTCTCTGAGGTGATTCAGGGTGGGTAGTGTGGCAATGCTAGAGAAATGGGCACTCCAGGCTGGAAAGGAAGGGCTGCAGGGGCTGGGGTGTCCTGGGCAGAGACGAGCGAAGGGAGACAGGCGCGGGCACTCAGCCGTGCAGCTGCGGAGCCCGGCTCTCCGGCCCGCGTGCGCTGACACAGGTACCTCTGCTTCGGCCGCAG
Seq C2 exon
GGAGATTCCGGGGGCCCCCTGGTGTGCCTCGTGGGCCAGGTGTGGCTGCAGGCAGGGGTCATCAGCTGGGGCGAGGGCTGCGCCCGGCGGAACCGCCCAGGTGTCTACATCCGGCTCACCTCCCACCACGACTGGATCCACCGGATCATCCCAGAGCTGCAGTTCCAGCGGGCAGGGCCAGGCAGTGCCCAGAAGCGGGACCCCCGGACCCGGCAGCCCCTTGGTCGGAACTCCGCACGCTACCCGGCCGCCTAAGCCGTCCTGGTCCTCGCAGCCCTGCTCGCCTTGCTCTGAGCCTTGCTCGGGCTGGTGGGCAGCGGCCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040394:ENSBTAT00000027417:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=NA C2=0.310
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(23.5=100)
A:
NA
C2:
PF0008921=Trypsin=PD(18.9=52.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGGACGACATGCTGTGTG
R:
CTCAGAGCAAGGCGAGCAG
Band lengths:
351-773
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]