MmuINT0127435 @ mm10
Intron Retention
Gene
ENSMUSG00000050762 | Prss27
Description
protease, serine 27 [Source:MGI Symbol;Acc:MGI:2450123]
Coordinates
chr17:24044859-24045954:+
Coord C1 exon
chr17:24044859-24045028
Coord A exon
chr17:24045029-24045551
Coord C2 exon
chr17:24045552-24045954
Length
523 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
GGCACTCTGCTTCCCCACAGGGT
3' ss Score
9.83
Exon sequences
Seq C1 exon
ACCGACTACCCAACCCACGGGTCCTGCAGAAACTTGCTGTGCCCATCATTGACACGCCCAAGTGCAACCTGCTGTACAACAAAGATGTTGAGTCTGACTTCCAGCTCAAAACCATCAAGGATGACATGCTGTGTGCAGGCTTCGCAGAGGGCAAGAAGGACGCCTGTAAG
Seq A exon
GTAGGGGGTTATGGCAAAGGCATCAGACCAGCAGCTCTCAACCTGTGGGTCCTCACAACTTTGGAGGTCAAACGACTCGTTCACAGGAGTCACATATGAGATACCTTACATATCAGATGTTTACAATTCATGAGCGGCAAAATTCGTAGCAATGAAAATAATTTTATGGCTAGGGGGTCTCCACATCAGGAGGAACTGTACCCTAGAAGGGTTGAGAACCGTTGTTCTAGAGGGAGCTCAGTCCAGGTCGAGGGTAGACTGTGGTTCCGTTAGCTGGCATGATAAGCAAGTCTTGGATCTGAAATGAGGGCCCAGAAGCCGCATTTCCAACAAACCCCACACTGGGCATATGCCACTGGCAGGCAAGCTGGGACAGCAGCAATGTGCAGGCTTGTCCATGCACAGGGCCAGAGCAGCAAGGGCCAGTGGGTAGGTTCCTTGGAAGGAGCTTTGTGGTGAGCAGAGCACCCCAGGATCTTTGTGAGGCCAGGGTAGGTTCTGATGGCACTCTGCTTCCCCACAG
Seq C2 exon
GGTGACTCTGGAGGCCCACTGGTGTGCCTTGTGGACCAGTCGTGGGTGCAGGCTGGGGTGATCAGCTGGGGAGAGGGTTGTGCCCGTCGGAATCGCCCAGGTGTCTACATCCGTGTGACTTCTCATCACAAATGGATCCACCAAATCATCCCAGAACTGCAGTTTCAGGGGAGAGCAGGCACCCAGCAGCAACAAAAAGACTCCCAAGGTCAGCAGCGCCTGGCGGGGAACTCCGCCCCTTGCCTGGCTGCCCATGCAATGGTGCTGGCCCTGGGAGCACTGCTGCTCAGGATCGTCTAGGGCTGCCCAGCCCCACAGGTGGAGCCCCACCCACTGTACATTTGTAAATACTGTGTTCCCGTCTGCCATGCCAGCTGCTTTTATATATGTTCACCACCAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050762:ENSMUST00000059482:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.131
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(23.5=100)
A:
NA
C2:
PF0008921=Trypsin=PD(18.9=45.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCTGCAGAAACTTGCTGT
R:
CTTTTTGTTGCTGCTGGGTGC
Band lengths:
350-873
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types