DreINT0008638 @ danRer10
Intron Retention
Gene
ENSDARG00000100088 | CU915738.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9GXL1]
Coordinates
chr15:37122103-37128313:-
Coord C1 exon
chr15:37128177-37128313
Coord A exon
chr15:37125369-37128176
Coord C2 exon
chr15:37122103-37125368
Length
2808 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
CCCTCTTTTGGCTTCCGCAGGGA
3' ss Score
11.5
Exon sequences
Seq C1 exon
GAAGCGCGGCTCAAATCCTTCAGAAAGCAGAAGTAAAGGTGATTAATGATACAGTGTGCAACATGGTGACCGAAGGTCAGGTGACCTCTAGAATGATGTGCAGCGGCTACCTTTCTGGAGGTGTGGATGCTTGTCAG
Seq A exon
GTAAAAAAAACAAACACATTTCATAAATATATAAACCGTCCAATGGTTCTTGAGGTCAAAAAGAGAAAACTTTTTTCAAGATTTTTGTGTATTTTTATAGCAAAACACAATAATTGAAGCAAATAATGGCATAAGTTTTCAGAAAACATCTTTTCTCAAAAAAAAACTTTTCAACAAAACAAGTTTGTGATTAAATAAAGATCATAAGATTAGTCATTTTAGGCCATAGTTGTAAAAAAAAACAATTCCTGCAAAATACTGCAGAAGTGGATTTCTGGTAGAAAATATATTTCATTTATTTATTCATCTTCCTTCAGCTTAGCCAAACTGCCAATTCCATGTTTCTGTCTGTTTTTTTCTTTCTTTCTTTCTCATGTTCTACATTTTTTATTTATTTATGAACAATATTTTTTGTGCATGTATAATTTCTAAGGAGGGAAATACACTCACTGGCCACTTTATTAGGTACACCTGTCCAACTGCTTGTTAGCGCAAATATTTAATCCGCCAATAACATGGCAGCAACCCAATGCATTTAGGCATGTAGACATGTTCAAGACGATCTGCTGCAGTTCAAACTGAGCATCAGAAAGGGGAAGAAAGGTGATATAAGTGACTTGTAATGGTTGTTGGTGCCAGACGGGCTGGTCTGAGTAATTCAGAAACTGCTGATCTACTGGGATTTTTATGCACAACCATCTCTAGGGTTTACAAAGAATGGTCTGAAAAATAGAAAATATCAAGAGAGCGGCAGTTCTGGGGGCGTAAATGCATTGTTGATGTCAGAGGAGAATGGTCAGCATGGTTCAAGCTGAAAGAAAAGCAACAATAGCTCAAATAAATACTCGTTACAACTGAGGTGTTCAGAAGAGCATCTATGAACGCACAACACGTTGAATCTTGAGGCAGCAGAATACCTCACTGGGTGCCACTCCTGTCAGCTAAGAACAAGAACAGGCTACAATTCACACAGGCTCAACAAAATTGGACAATAGAAGATTGCCTGGTCTGATGAGTCTCAATTTCTGCTGCGACATTCGGATATAGGGTCAGAATTTGGTGTCAACAACATGAAAGCATGGATCCATCCTGCCTTGTATCAACAGTTCAGGCTGGTGGTGGTGTAATGTGTGGGGATAGTTGACACCCTTTGGGCCCATTAGTACCAACTGGGCATCGTGTCAATGTCACAGCCTACCTGATTATTGTTGCTGACAATGTCCATCTCTTTATAACCACAGGGTACTCATCTTCTGATGGCTACTTCCAGCAGGATAATGCAAGTCATAATTCCATGACAATGAGTTTACTATACTCAAATGCCTCCACAGTCACCAGATCTCAATGCAATAGAGCACCTTTGGGATGTGGTGTAACAGGAGATTTGCATTATGGATGTGCAGCCGACAAATCTGTAGCAGTATAGACCAAAATCTCTGAGGCATATTTCCAGTACCTTGTTATATGCCATGAAGGATTAAGGCAGTTCTGAAGGCAAAAGGAGGTCCAACCTGGTACTAGTAAGGTGTACCTAATAAAGTGGCCATTGAATGTATATCTCTTTTAGATTTCATTAAAAAATATCTTCATTGGCATTTTAATTTTGGGGTGAACTGACCCCTTAAGGCCATTTAGACGACTCTTAGCATTTACAGACTCAAAACCCCAGCACTCCCGCCCAAGTTGCCAGCTTTATATAACCTACGCAAAATTACACCTTCGCTTGGTTTTAATGAATTCAAGGTGGTTTAATAGGCGTTTAGATGCACTGTCAAACCCCAAGTCTTTTTCATCCTGTTTCTATTCATTCAGAAACAACCTACAGTACAAATATGACATGAGCATAATGCCGTCAAAGTGTTCGGCTAATGTTGTTGTCTTCCCGCAGCGTGTGTACAGCCTCGTAGTGGAGAAGATTAATTATTCTACCTTGTTCCCTGATATTTAAATGAGCTGATTTCCATAATTTCTACTTCTATCTCACTTGTTATTCATCTTGCTTTCCCCCTTCTGAACGCTCCGTGCGTCTCTCTCTTATTCTGGGTGTAATCTTCTTAGTCTGCTTTTCTCCCGCACAGGTTCCGGTCCTGGTCTTCTGACTCCTTTCTCTCCTGCTATAGATTTCGCAAACGCCCGCTCTCTCTTTTTGTACTTTTTGCTTCATCCTTCTGTAATATTCTTTCATTCACTTGGTTGTTTTGTCTCTCTCTCTTTCCTCTCACCTCCCAATTCAAATATGCTTTATTGCCACGTCTGTTTGCATTGCAATATTGGCAAAGTAATTAAGAGCCGAATTGTATTACACACAAAACAAATCATTCAGGGATAATAGTAATGAAATGAAATGACACAGTAAATAAGCAGCTTAAATTAGAGGTACAAAATAATAAATGATGAGTGATTACAATAATAATTAAAATGTTCGCAAATTGCTTCACATGCATACACACTTTCTCACATACACAATACTCGTCAATAATATCCGTTCTGCTTCATAATAATTCAGATTCAAGCACTTTATTGGTGTGATTGTTTTATATACAATATTGTAAAAGATTCAATACGGACGTCAAAAATGATGAAACAAAATAAATTACAATCTTCAGTAGTACTGAAATAAATAACCCACAATATACAAAAATATAAATAAACATTCAATAATGAACATTCTCTAGACGAGATCAACAGGCAACTCTTGAATATGCTGATCAAATAGGTTTTGTTACACGAGTGTCCTCCATGCATTTGATATTTTTCAGACTGTTTTGGAACATGTTGCGTTACGTTTCCCTCTTTTGGCTTCCGCAG
Seq C2 exon
GGAGATTCGGGTGGCCCTCTTGTGTGTCTTTCCGAAGGTGGCAAATGGTTCCAGGCTGGCATAGTGAGCTGGGGAGAAGGCTGCGCTCGGAGGAACAAGCCTGGCGTTTACACGCGTGTCACCAAACTGCGGGAATGGATCCGTGAAATCACATCCTTATAGTGGAGCCTGGACCTGCAATCACAGCGACAACCAAAGCAGAAAAACCGAAATGTTCAGTGGCAGCACATTTTAGGAAAGTTTGTGAACTGCACGCACACAAAGTTAAAGCAACACTCCAAATAGTTTTGCAAATAGGCTTCTTTTACAAGTAAGCTAAAGTTAAACCGTATCTAATTTTTATTCCATTCAGCCAATCTCTGGGTCTGGGGAAGAACTTTTAGCTTAGCTTACCTTAGCATAGCCATTGGGTTTTCTGATGAGTGTGTTGTTAGGTAAAGGAGTAAACTTTTTAGCGAATGTTTATTGCTGTCATTTGTGTTTATTTTAATTGTAATCTTAAAATATACTGATTTTACTGTCAAAACGTAAACAAGATTTAGCTTAGCTTAGCATAGCCGTTGGGTTTTCCGATGAGTGTGGATTGTCATTACTGAGGGAGTAAACTTTTTAGTGAATGTGCATATAGTTGTCATTTGTGTTTATTTTAGTAGTAATCTCAACATATGCTGATTTTACTGTCAAAACAGGAAGAACTTTTAGGTTAGCTTAGCATAGCCGTTGGGTTTTCTGATGAGTGTGGAGCGTCAATAGGTAAGAAGTAAACTTTTTAGCGAATGTACATTATTGTCATTTGTGTTTATTTTAATAGTAATCTCAAAATATGCTGATTTTACTGTCAAATGGGGAGAACTTTTAGCTTAGCTTAGCATAGCCGTTGCGTTTTCTGATGAGTGTGGAGCGTCATTAGGTAAGAAGTAAACTTTTTAGCGAATGTGCATTGTTGTTATTTGTGTTTACCTTAATAGTAATCTTAACATATGCTGATTTTACTGTCAAAATTGGGAGACCTTTTAGCTTCGCTTAGCTTAGCATAGCCATTGGGCTGTCTGAAGAGTATGGAGCGTCATTACATAAGGAGTAAACTTTTTAGTGAATGTACATTGCTGTCATTTGTGTTTACCTTAATAGTAATCTCAGCATAAACTGACTTTACTGTCAAAACAGGGAGAACTCTGAGCTTAGCTTAGCTTAGCATAGCTGTTGAGTTTTCTGAGTGTGAAGCATTGTTTTGGTAAGGAGTAAACTTTTTAGCGAATGTACATTGCTGTCATTTGTGTTTATTTTAATAGTAATCTCAAAATATGCTGATATGACTGTCAAAACATTGCTAATTTGACCCCGTATGAAAGCAAAATGTTGCTAATTTGACCCAGTATGGGAGCAGGTATGGCACAAGATAACCTAAAGGAGTTTTGAAGTTTTAGGACTTTTAAAATAATATAGTGTTTTTTCTACTGCATATAAAATAAGCACTGATTATTTTAGAGTAACATAAATTCAAGTTTAAATCAGCTAGCCTAAAAGTGATTCTCCTTGACCTTATTTTATATCAATATTTGTGGATAGTAGGCCTATGTACAGTATGCACTCAATGGCTGGACTTACGACTTTCCATTTTATGTTATTCACATATTATTACTACAGCTATGGGGGAAAAATATGAGATTACTATAGAATTCCCAGTGTCTTTGTATTTGCTATGTTAATAATATATATATTTTTTTTTTGAGTAAAATAATATTTTTTGGTAGTATAAATCTCTAAAGAATCAAGAGTTTTGTTTTTTCTATTTAAAAGTTGACTCATCTTCTGTAGTTACATCGTGTACTGATACTGATAGAAACTGAAAAGTGACATTGCTGGAAACTATTTCAAGTGTGCATAATATTGCGGCTGCTGCAGCCATGGTACAGCAGCAAACATTCCTTATTATTATGCTGGAATGAGAGTATAGTTTCTAGCCATATCAGTCTAGAAAATAGCAACTTTTCATTTCCAGTTGATCGTAGTACACAATGTAAGTACAGAAGTGTAATGACTTAAATAAGAATTATCAAAACTCATTTTATATCTTTTTTTAGTGAGATGCTAATGGTCTAATCTGTTTTAATGATCTATGCTAAGCTAAGCTAATAGTGCTCCTGCCAGACCAGGAGATCGGCTGACATTTAGATTCAAGTACATTCAGATTCCACTAAAATGAGGTTATATGTGAATATGATGAACTGTTACACTCATTTACCAACTGCTTTGTCTCACAGATGTATCGCTTCCAGGCGTTCATATCAGAATCCTTGAATAAGTAACTTTTATAAATGTCACTTGGAGATCAAGCTGTTCTATAATGAGACTGGCCTGATAGACGTCATGTTGTTATCTTTTTGAATGAACTTTCCCATGCTCAAAATGTGCCTTTCTTTCCAGAAACTACACTGTGTATCTATTCAGGAACAATGGCTCTTGTGTAGCTGAAGTTCCAGTGCCTGTTTTATTTTTTATTTCTTTCTCTCTTTTAGTGAAGGTCAAAAGCTTCTTTGCAATCTAGAAATTCCTGTAAGCATCCCACTCAGGCTGACCTTCCTTCCTCACATCTGTGTGATCTCAGGACCTCTGTGCCGAAGCTCTAAAATGGAGGATTAGGTAAAAATAGGAGATTTCCGTCATCCATTTGCCAATACAACCAAGGCCAACATGGGTCACTCACTTCTGCTGCATGTTAAAGTTCCAGCCAATCAATGTCAAAGCTGCTGGCGGAAACACCCAGCAGAATGGTCTCTCCTTCAAAGGGTCCCGAATTATTGAGGAATCTATAATGCCGATTCCTCATAAGCTTGGCAAGTTTCTTTCCCATGGAAAGTCCACTTGCTTAGTATGATTTTTTTTAGGGTTTTGACTTAATTTCCCAGTATAGGCACAAGAGAGACGTAAGCTGTATTTTCAGAGTTGTCAAACAAGAGATGATATATTTATATACTACCAGAGTTTCATATAGGATCATGATGCAGTTTAATCTTCTGAGGGCTTGTTAGGCTTGGATTTTTAAATATAGCTTCAACCAAAATTGATTGTTAAATTGTAAGTGTTTATTGCTTTTAAATGTCTGGGTGACTAACATTTGTAAATATTTCACATGCTCTTATTAATATAGTGGAATACTTGGTGCTTTCTCTTCAGTTTTGTTGCATTTTGTATTTTAAACGTTTTTTTTAATGTATTCAGATTTTACAACACTGTCTTGACAAATAAAATATGTGGTGGTTTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100088:ENSDART00000165867:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.3=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.7=85.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]