RnoINT0118698 @ rn6
Intron Retention
Gene
ENSRNOG00000005336 | Prss27
Description
serine protease 27 [Source:RGD Symbol;Acc:1303256]
Coordinates
chr10:13417190-13418260:+
Coord C1 exon
chr10:13417190-13417359
Coord A exon
chr10:13417360-13417857
Coord C2 exon
chr10:13417858-13418260
Length
498 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
3' ss Seq
GGACCTCTGCTTCCCCACAGGGT
3' ss Score
9.88
Exon sequences
Seq C1 exon
ACCGGCTACCCAACCCACGGATCCTGCAGAAACTTGCTGTGCCTCTCATTGACACGCCCAAGTGCAACCTTCTGTACAGCAAGGATGCTGAGGCTGACATCCAGCTCAAAACCATCAAGGACGACATGCTCTGTGCAGGCTTTGCAGAGGGCAAGAAGGACGCCTGTAAG
Seq A exon
GTAGTGTATTATGGCAAAGGTGTTAGAGAAGCAGTTCTCAAACTGTGGGTCCTGACAACTTTGGGGGTCGAATGACTTTCACACGGGTCACGTATGAGATACCTTACATATCCAATGTTTACAATTCCTGAGTGGCAAAAACGGTAGCAATGAAAATGACTTTATGGTTGGGGGGTCTCCACAACAGAAGGAACTGTGTCAAAGGGTCACCACATTAACTGGGTTTGGGAACCACTGTTCTAGAGGGAGCTCAGCCCAGGTCAAGGGGTATACTGGGTTCCATTAGCTGGCAATGATAAGCAAGTCTTGGGTCTGAAATGGGGGCCCAGAAGCTGCATTTCCAACAAACACCACACTGGGTGTATGCAATGTGCAGGCTTGTCCGTGAGAGAACCAGTGGGGAGTTTCCTGGAAGGGGGCTTTGTGATGAGCACACAAGAGTACAAAGGACCTCTGTGAGGCCAGGGTGGGTTCTGATGGACCTCTGCTTCCCCACAG
Seq C2 exon
GGTGACTCTGGAGGCCCATTGGTATGCCTTGTGGACCAGTCATGGGTGCAGGCTGGGGTAATCAGCTGGGGAGAGGGCTGTGCCCGCCGGAATCGTCCAGGTGTCTACATCCGTGTGGCTTCTCATTACCAATGGATCCACCAAATCATCCCAGAACTACAGTTCCAGGGGAGAGCCGGCAGCCAGCAGCAGCAAAGAGACCCCCGAGGTTGGCAGCCCCTGGCAGAGAACTCCGCCCCCTGCCTGGCTGCCCATGCAGTTTTGCTGGCCCTGGGAGCACTGATGCTTGGGATCCTCTAGGGCTGCTCAGCCCGGCAGGTGGAGCCCCACCCACTGTACATTTGTAAATACTGTCCCCCTATCTTACATCCCAGCCACTTTTATTTATGTTCACCTCCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005336:ENSRNOT00000007392:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.121
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(23.5=100)
A:
NA
C2:
PF0008921=Trypsin=PD(18.9=45.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGACGACATGCTCTGTGC
R:
GCCCTAGAGGATCCCAAGCAT
Band lengths:
358-856
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]