HsaINT0132962 @ hg19
Intron Retention
Gene
ENSG00000172382 | PRSS27
Description
protease, serine 27 [Source:HGNC Symbol;Acc:15475]
Coordinates
chr16:2762423-2763699:-
Coord C1 exon
chr16:2763530-2763699
Coord A exon
chr16:2762816-2763529
Coord C2 exon
chr16:2762423-2762815
Length
714 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
3' ss Seq
TGACTCTGCGTCCCCCGCAGGGC
3' ss Score
11.23
Exon sequences
Seq C1 exon
ACCTCCTGCCCGAACCGCGGATCCTGCAGAAACTCGCTGTGCCCATCATCGACACACCCAAGTGCAACCTGCTCTACAGCAAAGACACCGAGTTTGGCTACCAACCCAAAACCATCAAGAATGACATGCTGTGCGCCGGCTTCGAGGAGGGCAAGAAGGATGCCTGCAAG
Seq A exon
GTGGGAGCAATGTGGTGTCCATGGGGACTCAGTCCCCACCGCCAGGCCCAGGGCAGGGTGGGATCATGCCCCGCTCCATGGGCTATGCATTCAACCAGCTGAGCAGCTTGTTTTGAAAAGGCAGATTCCAGGGCCGGGTGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGAGGGTGGATCACAAGGTCAGGAGATGGAGACCATCCTGGCTAACACAGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGCGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCAGTGCACTCCAGCCTGGGCCACAGAGCAAGACTCCGTCTCAATAAAAAAAAAAAAGAAAAAGCAGATTCCTGGACCCCACCCCAGAAGGATCAGAGTCAGTGGGTCTGGGGTGGGGCACAAGAAACTGCATTTTCAACACACACACACACCCTAGTTGATCTGGGGACACTAAAGAATAGGCACTTTAGACAATCGGACTGGCAGGGGATGGGGAGCCGGGCAGAGAGGCTCTGGGATGGAGAGAAGGAATCCATTGCGGAGCTACACACCTCCTGTGCGGCTGCAACTGAGTCTCTGGGAACTCAAGGTGGGCTCTGACGGTGACTCTGCGTCCCCCGCAG
Seq C2 exon
GGCGACTCGGGCGGCCCCCTGGTGTGCCTCGTGGGTCAGTCGTGGCTGCAGGCGGGGGTGATCAGCTGGGGTGAGGGCTGTGCCCGCCAGAACCGCCCAGGTGTCTACATCCGTGTCACCGCCCACCACAACTGGATCCATCGGATCATCCCCAAACTGCAGTTCCAGCCAGCGAGGTTGGGCGGCCAGAAGTGAGACCCCCGGGGCCAGGAGCCCCTTGAGCAGAGCTCTGCACCCAGCCTGCCCGCCCACACCATCCTGCTGGTCCTCCCAGCGCTGCTGTTGCACCTGTGAGCCCCACCAGACTCATTTGTAAATAGCGCTCCTTCCTCCCCTCTCAAATACCCTTATTTTATTTATGTTTCTCCCAATAAAAACCCAGCCTGTGTGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172382-PRSS27:NM_031948:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(23.5=100)
A:
NA
C2:
PF0008921=Trypsin=PD(18.9=69.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGAGGAGGGCAAGAAGGAT
R:
CAAATGAGTCTGGTGGGGCTC
Band lengths:
343-1057
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)