BtaEX6108079 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000040394 | PRSS27
Description
protease, serine 27 [Source:HGNC Symbol;Acc:HGNC:15475]
Coordinates
chr25:2128428-2130424:-
Coord C1 exon
chr25:2130392-2130424
Coord A exon
chr25:2129751-2129913
Coord C2 exon
chr25:2128428-2128699
Length
163 bp
Sequences
Splice sites
3' ss Seq
CCTCGGCTCTGTTCCTCCAGCCT
3' ss Score
7.91
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
TTTCAGGGACTCGGGGAGGCGAGGCACTGAACG
Seq A exon
CCTGCGGCCGCCCGCGGATGCTGAACCGGATGGTGGGCGGGCAGAATGCCTTGGAGGGCGAGTGGCCCTGGCAGGTCAGCATTCAGCGAAACGGAAGCCACTTCTGCGGGGGCAGCCTCATCACGGACCGGTGGGTCCTCACCGCCGCGCACTGCTTCTCCAA
Seq C2 exon
CACCTCTGAAACATCCCTGTACCAGGTCCTGCTGGGGGTGCTGCAGCTGGCGAGGCCAGGGCCACACGCCGTGTATGCCCGGGTGAAGCGGGTCGAGAGCAACCCCAAGTACCAAGGCATGGCCTCTAGCGCCGATGTGGCCCTGGTGGAGTTGGAGGCACCTGTGACCTTCACCAACTACATCCTCCCCGTGTGTGTGCCTGACCCCTCAGTCGTCTTTGAGTCGGGCATGAAGTGCTGGGTCACCGGCTGGGGCACCCCCAGTGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040394-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.011
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(18.5=80.0)
C2:
PF0008921=Trypsin=FE(38.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCAGGGACTCGGGGAGG
R:
ACTCAAAGACGACTGAGGGGT
Band lengths:
257-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]