HsaEX0050481 @ hg38
Exon Skipping
Gene
ENSG00000172382 | PRSS27
Description
protease, serine 27 [Source:HGNC Symbol;Acc:HGNC:15475]
Coordinates
chr16:2714065-2716526:-
Coord C1 exon
chr16:2716500-2716526
Coord A exon
chr16:2715718-2715880
Coord C2 exon
chr16:2714065-2714336
Length
163 bp
Sequences
Splice sites
3' ss Seq
CGCTCCCCATGCTCCCCCAGCCT
3' ss Score
6.63
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GGTCTCAGAGGGCCAAGGCAGCAACAG
Seq A exon
CCTGTGGTCGCCCCAGGATGCTGAACCGAATGGTGGGCGGGCAGGACACGCAGGAGGGCGAGTGGCCCTGGCAAGTCAGCATCCAGCGCAACGGAAGCCACTTCTGCGGGGGCAGCCTCATCGCGGAGCAGTGGGTCCTGACGGCTGCGCACTGCTTCCGCAA
Seq C2 exon
CACCTCTGAGACGTCCCTGTACCAGGTCCTGCTGGGGGCAAGGCAGCTAGTGCAGCCGGGACCACACGCTATGTATGCCCGGGTGAGGCAGGTGGAGAGCAACCCCCTGTACCAGGGCACGGCCTCCAGCGCTGACGTGGCCCTGGTGGAGCTGGAGGCACCAGTGCCCTTCACCAATTACATCCTCCCCGTGTGCCTGCCTGACCCCTCGGTGATCTTTGAGACGGGCATGAACTGCTGGGTCACTGGCTGGGGCAGCCCCAGTGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172382_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.109 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(18.5=80.0)
C2:
PF0008921=Trypsin=FE(38.2=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAGAGGGCCAAGGCAG
R:
TCAAAGATCACCGAGGGGTCA
Band lengths:
247-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development