MmuEX6075568 @ mm9
Exon Skipping
Gene
ENSMUSG00000050762 | Prss27
Description
protease, serine, 27 [Source:MGI Symbol;Acc:MGI:2450123]
Coordinates
chr17:24179021-24181498:+
Coord C1 exon
chr17:24179021-24179047
Coord A exon
chr17:24179769-24179931
Coord C2 exon
chr17:24181227-24181498
Length
163 bp
Sequences
Splice sites
3' ss Seq
GTGATTCCATGTTCTTCCAGCCT
3' ss Score
7.72
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GGACTGAAGGGGCCAGGACTCTGAGAG
Seq A exon
CCTGTGGGCATCCAAAGATGTTCAACCGGATGGTGGGCGGGGAGAACGCCTTAGAAGGTGAGTGGCCCTGGCAGGTCAGCATCCAGCGCAACGGAATCCACTTCTGTGGGGGCAGTCTCATCGCACCAACATGGGTCCTCACTGCTGCACACTGCTTCTCCAA
Seq C2 exon
CACTTCGGACATATCCATATACCAGGTCCTGCTGGGGGCACTGAAGCTGCAGCAGCCAGGACCACACGCCTTGTATGTCCCCGTGAAGCAGGTGAAAAGCAATCCTCAGTACCAAGGCATGGCCTCCAGTGCCGACGTGGCTCTGGTGGAGCTGCAGGGGCCGGTGACCTTCACCAATTACATCCTTCCTGTGTGCCTTCCTGATCCCTCGGTCATCTTTGAGTCGGGCATGAACTGCTGGGTCACTGGCTGGGGCAGCCCCAGTGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050762-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(18.5=80.0)
C2:
PF0008921=Trypsin=FE(38.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGAAGGGGCCAGGACTC
R:
ATGACCGAGGGATCAGGAAGG
Band lengths:
242-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: