RnoEX6046347 @ rn6
Exon Skipping
Gene
ENSRNOG00000005336 | Prss27
Description
serine protease 27 [Source:RGD Symbol;Acc:1303256]
Coordinates
chr10:13414523-13416860:+
Coord C1 exon
chr10:13414523-13414549
Coord A exon
chr10:13415183-13415345
Coord C2 exon
chr10:13416589-13416860
Length
163 bp
Sequences
Splice sites
3' ss Seq
GTGATTTCATGTTCTTCCAGCCT
3' ss Score
7.38
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GGACTGAAGGGGCCGAGGCTATGAGAG
Seq A exon
CCTGTGGGCATCCAAGGATGTTTAACCGGATGGTGGGCGGGGAGGATGCCTTAGAAGGTGAGTGGCCCTGGCAGGTCAGCATCCAGCGCAATGGAGCTCACTTCTGTGGGGGCAGTCTCATCGCACCAACATGGGTCCTCACTGCTGCTCACTGCTTCTCCAA
Seq C2 exon
CACATCAGACATATCCATATACCAGGTCCTGCTGGGGGCACTGAAGCTGCAACAGCCAGGACCACATGCCCTGTATGTCCCCGTGAAGCGGGTGAAAAGCCATCCTGAGTACCAAGGCATGGCTTCCAGTGCCGACGTGGCTCTGGTGGAGCTGCAGGTGCCTGTGACCTTCACCAAATACATCCTTCCCGTGTGCCTGCCTGACCCTTCGGTCGTTTTCAAGTCGGGCATGAACTGCTGGGTCACCGGCTGGGGCAGTCCCAGTGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005336-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(18.5=80.0)
C2:
PF0008921=Trypsin=FE(38.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGGGCCGAGGCTATGAG
R:
CCCGACTTGAAAACGACCGAA
Band lengths:
250-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]