MmuEX6075568 @ mm10
Exon Skipping
Gene
ENSMUSG00000050762 | Prss27
Description
protease, serine 27 [Source:MGI Symbol;Acc:MGI:2450123]
Coordinates
chr17:24042054-24044531:+
Coord C1 exon
chr17:24042054-24042080
Coord A exon
chr17:24042802-24042858
Coord C2 exon
chr17:24044260-24044531
Length
57 bp
Sequences
Splice sites
3' ss Seq
GTGATTCCATGTTCTTCCAGCCT
3' ss Score
7.72
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGACTGAAGGGGCCAGGACTCTGAGAG
Seq A exon
CCTGTGGGCATCCAAAGATGTTCAACCGGATGGTGGGCGGGGAGAACGCCTTAGAAG
Seq C2 exon
CACTTCGGACATATCCATATACCAGGTCCTGCTGGGGGCACTGAAGCTGCAGCAGCCAGGACCACACGCCTTGTATGTCCCCGTGAAGCAGGTGAAAAGCAATCCTCAGTACCAAGGCATGGCCTCCAGTGCCGACGTGGCTCTGGTGGAGCTGCAGGGGCCGGTGACCTTCACCAATTACATCCTTCCTGTGTGCCTTCCTGATCCCTCGGTCATCTTTGAGTCGGGCATGAACTGCTGGGTCACTGGCTGGGGCAGCCCCAGTGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050762-'2-5,'2-4,3-5
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(18.5=80.0)
C2:
PF0008921=Trypsin=FE(38.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGGGCCAGGACTCTGAG
R:
TGCCTTGGTACTGAGGATTGC
Band lengths:
141-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types