GgaEX6025850 @ galGal4
Exon Skipping
Gene
ENSGALG00000021273 | TMPRSS13
Description
transmembrane protease, serine 13 [Source:HGNC Symbol;Acc:HGNC:29808]
Coordinates
chr24:5415439-5416155:-
Coord C1 exon
chr24:5416112-5416155
Coord A exon
chr24:5415692-5415851
Coord C2 exon
chr24:5415439-5415611
Length
160 bp
Sequences
Splice sites
3' ss Seq
CCCTCTGCTCTCCCCTGCAGCCT
3' ss Score
12.35
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
CTCCCAGTGTCTGACGGGCAAATTTGTCTCCCTGCGGTGTACAA
Seq A exon
CCTGTGGGCAGAGGATTTCGGGCCGAATCATCGGAGGGAAGGAAACCTCGGTGAGCAAATGGCCCTGGCAGGTCAGCGTGCAGTACGGGCCCGTCCACATCTGTGGTGGTACCATCATCGATGCGCAGTGGGTGCTCACCGCCGCTCACTGCTTCTTCAT
Seq C2 exon
GAACAGCATGAAGATCCTCGACGACTGGAAGGTGTACGGCGGGGTGTCGGACCTCAAGCAGCCCATGGAGGGCATCCCAGTCTCCCAGGTCATCATCAACTCCAACTACAGTGATGACCACGACGACTATGACATTGCTCTCATGAAGCTCTCCCGGCCGCTGACGCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021273-'6-7,'6-6,10-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(16.5=100)
A:
PF154941=SRCR_2=PD(5.5=9.3),PF0008921=Trypsin=PU(19.2=81.5)
C2:
PF0008921=Trypsin=FE(25.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCAGTGTCTGACGGGC
R:
GCCGGGAGAGCTTCATGAGAG
Band lengths:
202-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]