HsaEX0066068 @ hg19
Exon Skipping
Gene
ENSG00000137747 | TMPRSS13
Description
transmembrane protease, serine 13 [Source:HGNC Symbol;Acc:29808]
Coordinates
chr11:117779327-117781465:-
Coord C1 exon
chr11:117781422-117781465
Coord A exon
chr11:117780521-117780683
Coord C2 exon
chr11:117779327-117779499
Length
163 bp
Sequences
Splice sites
3' ss Seq
CGTCTACTCCTTCCCTCCAGACT
3' ss Score
9.15
5' ss Seq
CGTGTAAGT
5' ss Score
8.58
Exon sequences
Seq C1 exon
GTCTGAATGCCCTTCCCAGCGGTATATCTCTCTCCAGTGTTCCC
Seq A exon
ACTGCGGACTGAGGGCCATGACCGGGCGGATCGTGGGAGGGGCGCTGGCCTCGGATAGCAAGTGGCCTTGGCAAGTGAGTCTGCACTTCGGCACCACCCACATCTGTGGAGGCACGCTCATTGACGCCCAGTGGGTGCTCACTGCCGCCCACTGCTTCTTCGT
Seq C2 exon
GACCCGGGAGAAGGTCCTGGAGGGCTGGAAGGTGTACGCGGGCACCAGCAACCTGCACCAGTTGCCTGAGGCAGCCTCCATTGCCGAGATCATCATCAACAGCAATTACACCGATGAGGAGGACGACTATGACATCGCCCTCATGCGGCTGTCCAAGCCCCTGACCCTGTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137747_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(16.5=100)
A:
PF154941=SRCR_2=PD(5.5=9.1),PF0008921=Trypsin=PU(19.2=80.0)
C2:
PF0008921=Trypsin=FE(25.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCCTTCCCAGCGGTATAT
R:
GGACAGGGTCAGGGGCTT
Band lengths:
210-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)