BtaEX6058378 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008342 | TMPRSS13
Description
transmembrane protease, serine 13 [Source:HGNC Symbol;Acc:HGNC:29808]
Coordinates
chr15:29009696-29012354:-
Coord C1 exon
chr15:29012311-29012354
Coord A exon
chr15:29011102-29011264
Coord C2 exon
chr15:29009696-29009868
Length
163 bp
Sequences
Splice sites
3' ss Seq
TCTCTTCTGCTTCTCTCCAGACT
3' ss Score
10.01
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
GTCTGATTGCCCTTCCCAGCAGTATGTTGCTCTACAGTGTTCCC
Seq A exon
ACTGTGGCCTGAGGGCCATGACCGGGCGGATCGTGGGAGGGGCGCGGGCCCCAGAAAGCAAGTGGCCATGGCAAGTCAGCCTGCAGTTCTCCCGTACCCACATTTGTGGGGGCACGCTGATCGATGCCCAGTGGATTCTCACCGCCGCCCACTGCTTCTTTAT
Seq C2 exon
TACCCGGGAGAAGATTTTGGAGGGCTGGAAGGTGTACGTGGGCACCAACGATCTGCACCACCTGCCCGAGTCAGCCTCCGTCGCCCAGATCATCATCAACAGCAACTACTCAGATGATCAGGACGACTATGACATCGCCCTCATGCGGCTCTCCAAGCCCCTGACCCTGTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008342-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(16.5=100)
A:
PF154941=SRCR_2=PD(5.5=9.1),PF0008921=Trypsin=PU(19.2=80.0)
C2:
PF0008921=Trypsin=FE(25.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATTGCCCTTCCCAGCAGTA
R:
CAGGGTCAGGGGCTTGGAG
Band lengths:
210-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]