HsaEX0066068 @ hg38
Exon Skipping
Gene
ENSG00000137747 | TMPRSS13
Description
transmembrane protease, serine 13 [Source:HGNC Symbol;Acc:HGNC:29808]
Coordinates
chr11:117907454-117910750:-
Coord C1 exon
chr11:117910707-117910750
Coord A exon
chr11:117909806-117909968
Coord C2 exon
chr11:117907454-117908784
Length
163 bp
Sequences
Splice sites
3' ss Seq
CGTCTACTCCTTCCCTCCAGACT
3' ss Score
9.15
5' ss Seq
CGTGTAAGT
5' ss Score
8.58
Exon sequences
Seq C1 exon
GTCTGAATGCCCTTCCCAGCGGTATATCTCTCTCCAGTGTTCCC
Seq A exon
ACTGCGGACTGAGGGCCATGACCGGGCGGATCGTGGGAGGGGCGCTGGCCTCGGATAGCAAGTGGCCTTGGCAAGTGAGTCTGCACTTCGGCACCACCCACATCTGTGGAGGCACGCTCATTGACGCCCAGTGGGTGCTCACTGCCGCCCACTGCTTCTTCGT
Seq C2 exon
GACCCGGGAGAAGGTCCTGGAGGGCTGGAAGGTGTACGCGGGCACCAGCAACCTGCACCAGTTGCCTGAGGCAGCCTCCATTGCCGAGATCATCATCAACAGCAATTACACCGATGAGGAGGACGACTATGACATCGCCCTCATGCGGCTGTCCAAGCCCCTGACCCTGTCCGGTGAGGGAATCTGCACTCCCCGCTCTCCTGCCCCCCAGCCCCAGCACCCTCTGCAGCCCTCGCACTTGTCAGCATCTGTCAACTCATATCCGGGCCCCAAAGCTTCTGCAGGGCAGAAGTCAAAGACTCTTAAAGATCCTTACATGGAACACTTCTGTTTTATAATTAGGGAAACTGAAGCCCAAGGGTTATAAATAAGTTTGCTCCAAATGACACATCTCACATTACAAATTGATGACGGAGTCAGGGCTTGGGTACTGATCTTAATCAATAGATTGAATTCTTTCACTGGTATTAACTGAGCACCTAGGGGCCAAACGCTATGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137747_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.184
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(16.5=100)
A:
PF154941=SRCR_2=PD(5.5=9.1),PF0008921=Trypsin=PU(19.2=80.0)
C2:
PF0008921=Trypsin=PD(66.9=74.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGAATGCCCTTCCCAGC
R:
GAGAGCGGGGAGTGCAGATTC
Band lengths:
244-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development