DreEX6016182 @ danRer10
Exon Skipping
Gene
ENSDARG00000056324 | zgc:123295
Description
zgc:123295 [Source:ZFIN;Acc:ZDB-GENE-051127-11]
Coordinates
chr3:21061866-21065659:+
Coord C1 exon
chr3:21061866-21061886
Coord A exon
chr3:21061974-21062142
Coord C2 exon
chr3:21065394-21065659
Length
169 bp
Sequences
Splice sites
3' ss Seq
ATTCTTTTTGCTCTCCTCAGTCT
3' ss Score
8.01
5' ss Seq
GGAGTAAGC
5' ss Score
5.07
Exon sequences
Seq C1 exon
GTTCACTCTGTCAGTTAAATG
Seq A exon
TCTGTGGTCGGGCCCCTCTTAACACTAAAATTGTAGGAGGACAGAATGCAGGAGCGGGATCTTGGCCGTGGCAAGTCAGCCTTCAGAGTCCCACCTATGGAGGCCATTTCTGTGGCGGGAGTCTAATCAATAAAGACTGGGTTCTGTCTGCAGCTCACTGCTTCCAGGA
Seq C2 exon
CTCCTTAGGTACAGTTAAGGTCAAACTGGGACTACAGAGCCAGTCAGGCTCAAACCCTTATCAGATAACCAAGACAGTAGTTCAAGTCATCAATCATCCTAACTATAACAACCCTAGCAATGACAATGACATAGCACTGGTCAAGCTTGATTCATCTGTGACTTTCAATGATTACATTGAGCCAGTGTGTCTGGCTGCTGCTGGAAATACCTATGCTGCTGGTACACTGAGCTGGGTCACTGGATGGGGGAAACTCAGTTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056324-'1-2,'1-1,2-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.011
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(20.1=80.7)
C2:
PF0008921=Trypsin=FE(38.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]