HsaINT1028200 @ hg38
Intron Retention
Gene
ENSG00000172460 | PRSS30P
Description
protease, serine, 30 pseudogene [Source:HGNC Symbol;Acc:HGNC:28753]
Coordinates
chr16:2841163-2841848:-
Coord C1 exon
chr16:2841680-2841848
Coord A exon
chr16:2841329-2841679
Coord C2 exon
chr16:2841163-2841328
Length
351 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
ACCCGCCCATCCCTCTGCAGAAT
3' ss Score
11.53
Exon sequences
Seq C1 exon
CACAGAGGGCTCCAGCGTGATTGCCACTGGTTAATGACCTGCCACCCCCGCCCCCCCAACCTCTGGTGCCGTCCAAGGACTCTGACCCCAGTGCAGTGTCTGTAGGGAAGAGGAGCCATGGGGCTTCGGGCAGGCCCCATCCTGCTTCTGCTGCTGTGGCTGCTGCCAG
Seq A exon
GTAAGGGATGCGCCTCTGTCTTCTCCTCCCTCCCATCCCCTGCCAGCCTGTGTGCCCCCCTTTGCTCTCTTGCTTTCCAGGGGCCCATTGGGATGTGCTGCCTTCAGGTACCGTAGACATCTCATCCCTGCACTCAAACAGCCCCTACTCCTGGCCAGGGAGGACTGGCCCCAGGGGACATGCAGAGGCCCTTGGCCCTGGGAGCCTCATCCCTGGACATCAAGGGCAGAGGAATGTCAGAAGGGATGTCAGAAGGGCAGAGGGATGTTAGGGTAAAGAGTCAGACCGGGAGGGATGGGCTTTCTGAGAGGGAATAAAGCTGAGGTCTCCCACCCGCCCATCCCTCTGCAG
Seq C2 exon
AATGCGGCCACTCCAAGGAGGCCGGGAGGATTGTGGGAGGCCAAGACACCCAGGAAGGACGCTGGCCGTGGCAGGTTGGCCTGTGGTTGACCTCAGTGGGGCATGTATGTGGGGGCTCCCTCATCCACCCACGCTGGGTGCTCACAGCCGCCCACTGCTTCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172460:ENST00000506153:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGGGCTCCAGCGTGATT
R:
AGCGTGGGTGGATGAGGG
Band lengths:
302-653
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains