RnoINT0118706 @ rn6
Intron Retention
Gene
ENSRNOG00000033266 | Prss30
Description
protease, serine, 30 [Source:RGD Symbol;Acc:735142]
Coordinates
chr10:13350638-13350943:-
Coord C1 exon
chr10:13350917-13350943
Coord A exon
chr10:13350786-13350916
Coord C2 exon
chr10:13350638-13350785
Length
131 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACG
5' ss Score
10.52
3' ss Seq
AGTGTGTGGCCACTCCACAGGTG
3' ss Score
6.24
Exon sequences
Seq C1 exon
GGGGACGTGGAGATATATTGCATTCAG
Seq A exon
GTAACGGACAGCCCAGAGATTCCCAGGGAAAAGTCCAGGACAGGGGATGAGAGGAGTGGTTGGAGATGGTGGGACCCAAGAGGGACTGACTTTCTGAGAAGGTCCCTCTGCAGTGTGTGGCCACTCCACAG
Seq C2 exon
GTGCTGGGAAGATTGTGGGTGGCCAAGATGCCCCGGAAGGACGATGGCCTTGGCAAGTCAGCCTGAGGACAGAGAAAGAGGGCCACATATGCGGGGGCTCCCTCATTCACGAGGTGTGGGTGCTCACGGCTGCCCACTGCTTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033266:ENSRNOT00000034340:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(19.1=90.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGACGTGGAGATATATTGCA
R:
GTGAGCACCCACACCTCGT
Band lengths:
154-285
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]