DreEX6067497 @ danRer10
Exon Skipping
Gene
ENSDARG00000040513 | zgc:92313
Description
zgc:92313 [Source:ZFIN;Acc:ZDB-GENE-040718-339]
Coordinates
chr12:4210282-4211890:-
Coord C1 exon
chr12:4211867-4211890
Coord A exon
chr12:4211496-4211581
Coord C2 exon
chr12:4210282-4210361
Length
86 bp
Sequences
Splice sites
3' ss Seq
AATCACTGTTTTTGTCTCAGAAT
3' ss Score
7.92
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GCTTATGGGTGGGCGAGGCTCAAG
Seq A exon
AATGTGGTCGACCACCGATGATAAACAGGATTGTTGGAGGTTCGTCAGCAGCTGAGGGTGCTTGGCCGTGGCAGGTGGATATTCAG
Seq C2 exon
GGTGAGAAATCAAAACATGTTTGTGGAGGAACCATCATCTCAGAGAACTGGGTCTTGTCTGCTGCACATTGCTTTCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040513-'1-3,'1-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(7.6=62.1)
C2:
PF0008921=Trypsin=FE(11.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTATGGGTGGGCGAGGCTC
R:
GCAATGTGCAGCAGACAAGAC
Band lengths:
95-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]