GgaEX6025890 @ galGal4
Exon Skipping
Gene
ENSGALG00000007340 | TMPRSS5
Description
transmembrane protease, serine 5 [Source:HGNC Symbol;Acc:HGNC:14908]
Coordinates
chr24:5495423-5495974:-
Coord C1 exon
chr24:5495931-5495974
Coord A exon
chr24:5495692-5495857
Coord C2 exon
chr24:5495423-5495598
Length
166 bp
Sequences
Splice sites
3' ss Seq
GAGCCCCGGCCCTCCTGCAGCCT
3' ss Score
5.08
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GAGCAGCTGCGAGTCGGGCCGTGTTGTGGCCCTGCAGTGCTCAG
Seq A exon
CCTGCGGGCAGCAAACGGCACCGGGGGGCCGCGTGGTGGGGGGCGTGGATGCTGCCCCGGGGCGCTGGCCATGGCAGGTGAGTGTCCGCCACGGCTCCCGGCACCGCTGCGGTGGCTCCGTGCTGGCACCGCGCTGGATCGTCACCGCCGCCCATTGCGTGCACAG
Seq C2 exon
CTACCGGTGGCGGAGAGCACTGGGCTGGACGGTTCGTGCTGGCGTCACTCGTGGCTCGGCCGAGCAGGAGGTCGGGGTGCCGGTGGAGAGAGTTATTTCTCACCCGCTGTACAATGATAACAGCATGGATTATGACATTGCTCTGATGAAGCTGCGGGTTCCCTTGAATTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007340-'6-6,'6-5,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.036 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(16.0=100)
A:
PF154941=SRCR_2=PD(5.3=8.9),PF0008921=Trypsin=PU(19.1=78.6)
C2:
PF0008921=Trypsin=FE(25.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCGGGCCGTGTTGTG
R:
GAACCCGCAGCTTCATCAGAG
Band lengths:
195-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]