DreEX0080014 @ danRer10
Exon Skipping
Gene
ENSDARG00000087717 | tmprss5
Description
transmembrane protease, serine 5 [Source:ZFIN;Acc:ZDB-GENE-131121-184]
Coordinates
chr15:18237430-18241102:-
Coord C1 exon
chr15:18240421-18241102
Coord A exon
chr15:18238789-18238933
Coord C2 exon
chr15:18237430-18237528
Length
145 bp
Sequences
Splice sites
3' ss Seq
TATCAGTGGTTATATTACAGAGT
3' ss Score
3.53
5' ss Seq
CTGGTTAGT
5' ss Score
6.32
Exon sequences
Seq C1 exon
TATTGTTAACAAATAAAGACAACCTGCAACACATAGAAACTTTTTTTCTGGTAATCACAAAAGCTCTTCATGATTCTGTTGTTATGCTTAAATGAGACTTGTCAGCATTCCACAGGTCAACTTTGTTTCCCAAAAGTTGTGAACTGTCAGGTTCAGAGCTCTACGGCTCAGCGGATCCTCCTCTTGGGCAGGTGAAGGTGGGGCTACACAGTCTGTATCCTATCAGTGACTGAGCGATTTCTTTGGAGATGTTTGGCTCTACAGAGGGCAGTTTAGGCAGCCATGACAGGCCCCATGACCCCCTTGGTAAAACAACGGGTTCATTCTTTGCTCCGCTGCTGACCTCATTGTCTCTTTGTGAAGTGAAAATCCAGCGCTGCATTCAGCTCAATGGTCTGACAGCTGCTGGTGTGGAGCATCTCTGCTGTGATGGAGGTAAGTTGATGAGAGAGTCCAGCAGCTGCTCTCAGGAAATCCCGAATCCCAACAACGAAAGCATG
Seq A exon
AGTCTCAGTAGAGATGCGGTGGCAGTGATTGAGAACCCTGTAGTGGTCAGACAGTCTTTTCATCCAGAGAGTCTGCAGGTGGACATGCTCGAGTCAGACCAGAATAACCACAGGTGCCTCAGAGAGCTGCAGTTTCTCCATCCTG
Seq C2 exon
TGTCTGGCAAAGTGTCATCTCGTAAACTAGTGAGAGTGTTTGCAGCTCTGTGTGTGCTGTGTCTGCTGGGAGGTGTTGTGGTTGGAGTTTGGTTCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087717-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.345 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTTGGTAAAACAACGGGT
R:
ACACACAGAGCTGCAAACACT
Band lengths:
256-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]