MmuEX7006221 @ mm10
Exon Skipping
Gene
ENSMUSG00000032268 | Tmprss5
Description
transmembrane protease, serine 5 (spinesin) [Source:MGI Symbol;Acc:MGI:1933407]
Coordinates
chr9:49111468-49113302:+
Coord C1 exon
chr9:49111468-49111511
Coord A exon
chr9:49112188-49112350
Coord C2 exon
chr9:49113124-49113302
Length
163 bp
Sequences
Splice sites
3' ss Seq
CCAGCCTTTTCTGTTTGCAGAGT
3' ss Score
9
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CGCTAACTGTCCTTCTGGCCGAATTGTTTCTCTCAAATGTTCTG
Seq A exon
AGTGTGGGGCAAGGCCTCTGGCTTCTCGAATAGTTGGCGGCCAAGCTGTGGCTTCTGGGCGCTGGCCATGGCAAGCTAGCGTGATGCTTGGCTCCCGGCACACGTGTGGGGCCTCTGTGTTGGCACCACACTGGGTAGTGACTGCTGCCCACTGCATGTACAG
Seq C2 exon
TTTCAGGCTGTCCCGCCTATCCAGCTGGCGGGTTCATGCAGGGCTGGTCAGCCACGGTGCTGTCCGACAACACCAGGGAACTATGGTGGAGAAGATCATTCCCCACCCTTTGTACAGTGCCCAGAACCATGACTATGATGTGGCTCTGCTGCAGCTCCGGACACCAATCAACTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032268-'3-21,'3-16,11-21=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(15.3=100)
A:
PF154941=SRCR_2=PD(5.1=9.1),PF0008921=Trypsin=PU(19.0=80.0)
C2:
PF0008921=Trypsin=FE(26.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTAACTGTCCTTCTGGCC
R:
AAGTTGATTGGTGTCCGGAGC
Band lengths:
218-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types