BtaEX6058163 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017650 | TMPRSS5
Description
transmembrane protease, serine 5 [Source:HGNC Symbol;Acc:HGNC:14908]
Coordinates
chr15:24582163-24584167:-
Coord C1 exon
chr15:24584124-24584167
Coord A exon
chr15:24583332-24583494
Coord C2 exon
chr15:24582163-24582341
Length
163 bp
Sequences
Splice sites
3' ss Seq
GGGTGCTCCTCTGTTTGCAGAGT
3' ss Score
8.19
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GGACCGCTGTGCTTCTGGTCAGATCGTCTCCCTCAAGTGTTCCG
Seq A exon
AGTGTGGGGCCAGACCCCTGGCTTCCCGGATCGTGGGCGGGCAGGCAGCAGCTCCTGGGCGCTGGCCCTGGCAGGCCAGTGTGACCCTGGGCTCCCGGCACACATGTGGGGCCTCTGTTCTGGGCCCGCGCTGGGTGGTGACCGCGGCGCACTGCACGCACAG
Seq C2 exon
TTTCAGGCTGTCCCGCCTGTCCAGCTGGCGGGTCCATGCGGGGCTGGTCAGCCACAGCACGGTCAGGCCACACCAGGGGGCTGTGGTACAGCGGATCATCACCCACCCTCTGTACAGCGCCCAGAACCATGACTATGACGTGGCCCTCCTGCAGCTCCGCACCCCACTGCACTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017650-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(15.3=100)
A:
PF154941=SRCR_2=PD(5.1=9.1),PF0008921=Trypsin=PU(19.0=80.0)
C2:
PF0008921=Trypsin=FE(26.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGCTTCTGGTCAGATCG
R:
CTGAGAAGTGCAGTGGGGTG
Band lengths:
218-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]