RnoEX0070385 @ rn6
Exon Skipping
Gene
ENSRNOG00000029865 | Prss56
Description
serine protease 56 [Source:RGD Symbol;Acc:1563955]
Coordinates
chr9:94279813-94280602:+
Coord C1 exon
chr9:94279813-94279920
Coord A exon
chr9:94280265-94280321
Coord C2 exon
chr9:94280413-94280602
Length
57 bp
Sequences
Splice sites
3' ss Seq
AAAGAATGGTTTCTCAGCAGGAC
3' ss Score
3.52
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
TTTTGTCTGCCCAGGGGACTCAGGCATTGCAGGCTGCCCAGAGGAGTGTCCAGTGGGCCATAAAGCACGTGTCCATGGAGATCCAGCACAGACGGCATGAATGCCAAG
Seq A exon
GACCTGGACGCCCTAGGCCTCAAGCCTCGGTCTTCCAGGACCCACCACCAGAGCCAG
Seq C2 exon
GTCCATGTGGAGAAAGACGCCAAAGCGTTGCCAACACGACCCGGGCTCACGGCCGCATAGTCGGTGGCAGCACGGCTCCATTGGGAGCCTGGCCTTGGCTAGTGAGGCTGCAACTTGGGGGCCTGCCTCTGTGCGGGGGCGTTCTGGTGGCAGCGTCCTGGGTGCTCACGGCTGCACACTGCTTCGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029865-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.189 A=1.000 C2=0.312
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0008921=Trypsin=PU(19.3=68.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCACAGACGGCATGAAT
R:
CCCAAGTTGCAGCCTCACTAG
Band lengths:
145-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]