MmuEX0000489 @ mm9
Exon Skipping
Gene
ENSMUSG00000036480 | 1700027L20Rik
Description
protease, serine 56 [Source:MGI Symbol;Acc:MGI:1916703]
Coordinates
chr1:89080730-89081517:+
Coord C1 exon
chr1:89080730-89080837
Coord A exon
chr1:89081178-89081231
Coord C2 exon
chr1:89081328-89081517
Length
54 bp
Sequences
Splice sites
3' ss Seq
AAAGGATTGTTTCTCAGTAGGAC
3' ss Score
3.37
5' ss Seq
CAGGTGAAA
5' ss Score
5.07
Exon sequences
Seq C1 exon
TTTTATCTGCCCAGGGGACTCAGGCATTGCAGGCTGCCCAGAGGAGTGCCCAGTGGGCCATAAAGCGCGTGTTGATGGAGATCCAGCACAGACTACATGAATGCCAAG
Seq A exon
GACCTGGACGCCCTAGACCTCAAGCCCCCCTCCTCCAGGACCCACCGGAGCCAG
Seq C2 exon
TACAATGTGGAGAAAGACATCAAGGCGTTGCCAACACGACCCGGGCTCACGGCCGCATAGTCGGTGGCAGCACGGCTCCCTCGGGGGCCTGGCCTTGGCTAGTGAGGCTGCAACTTGGAGGGTTGCCTCTGTGCGGGGGTGTCCTGGTAGCAGCATCCTGGGTGCTCACGGCTGCACATTGCTTCGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036480_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATCTGCCCAGGGGACTCAG
R:
GGCAACGCCTTGATGTCTTTC
Band lengths:
138-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: