HsaEX7001800 @ hg38
Exon Skipping
Gene
ENSG00000237412 | PRSS56
Description
protease, serine 56 [Source:HGNC Symbol;Acc:HGNC:39433]
Coordinates
chr2:232521321-232522160:+
Coord C1 exon
chr2:232521321-232521428
Coord A exon
chr2:232521816-232521866
Coord C2 exon
chr2:232521971-232522160
Length
51 bp
Sequences
Splice sites
3' ss Seq
AAAGGTCTGTTTCTCTGCAGGAT
3' ss Score
9.56
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TTCTGTCGGCCCAGGGGACTCAGGCGTTGCAGGCAGCCCAGAGGAGCGCCCAGTGGGCAATAAACCGAGTGGCGATGGAGATCCAGCACAGATCGCACGAGTGCCGAG
Seq A exon
GATCTGGGCGCCCCAGGCCTCAAGCTCTCCTCCAGGACCCACCTGAGCCAG
Seq C2 exon
GGCCGTGCGGCGAGAGGCGTCCGAGCACTGCCAATGTGACGCGGGCCCACGGCCGCATCGTGGGGGGCAGCGCGGCGCCGCCCGGGGCCTGGCCCTGGCTGGTGAGGCTGCAGCTCGGCGGGCAGCCTCTGTGCGGCGGCGTCCTGGTAGCGGCCTCCTGGGTGCTCACGGCAGCGCACTGCTTTGTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000237412-'1-3,'1-2,4-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.162 A=1.000 C2=0.328
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0008921=Trypsin=PU(19.3=68.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATCCAGCACAGATCGCAC
R:
GAGCTGCAGCCTCACCAG
Band lengths:
147-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains