RnoEX0073041 @ rn6
Exon Skipping
Gene
ENSRNOG00000031090 | RT1-CE7
Description
RT1 class I, locus CE7 [Source:RGD Symbol;Acc:1595786]
Coordinates
chr20:4697715-4774551:-
Coord C1 exon
chr20:4774350-4774551
Coord A exon
chr20:4698167-4698436
Coord C2 exon
chr20:4697715-4697990
Length
270 bp
Sequences
Splice sites
3' ss Seq
CACCGCGCCCCCCCCCCCAGGCT
3' ss Score
8.82
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
GAAGTCGGCTACGTGGACGACACGGAGTTCGTGCGCTTCGACAGCGACGCGGAGAATCCGAGGATGGAGCCGCGGGCGCGGTGGATGGAGCGGGAGGGGCCGGAGTATTGGGATCGGGAGACACGGATCGCCAAGGGAAATGAGCAGAGGTTCCGAGTGCACCTGAGGACCCTGCTTGGCCACTACAACCAGAGCGAGGGCG
Seq A exon
GCTCGCACTCGCTGCGGTATTTCACCACGGCGCTGTCCCGGCCCGGCCTCGGGGAGCCCCGGTTCATCTCTGTCGGCTACGTGGACGACACGGAGTTCGTGCGCTTCGACAGCGACGCGGAGAATCCGAGATACGAGCCGCGGGCGCCGTGGATGGAGCGGGAGGGGCTGGAGTATTGGGAGCAGCAGACACGGAGAGCCAAGGGCAACCAGCAGACTTTCCAAGTGAACCTGAGGACCGCGCTCCACTACTACAACCAGAGCGAGGACC
Seq C2 exon
GCTCTCACACCATCCAGAGGATGTATGGCTGTGACGTGGGGTCGGACGGGAGCCTCCTCCGCGGGTATGAGCAGTCCGCCTACGATGGCCGCGATTATATCGCCCTGAACGAAGACCTGAAGACCTGGACAGCAGCAGACGTGGCTGCGCAGATCACCCGGAACAAGTGGGATCAGGCTGGTGTTGCAGAGAGACGCAGGGCCTACCTGGAGGGCACATGCATGAAGTGGCTCCGCAGATACCTGGAGCATGGGAAGGAGACGCTGCTGCGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031090_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.206 A=0.165 C2=0.048
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=FE(37.2=100)
A:
PF0012913=MHC_I=PU(50.3=98.9)
C2:
PF0012913=MHC_I=PD(49.2=94.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGTATTGGGATCGGGAGA
R:
CTCTGCAACACCAGCCTGATC
Band lengths:
293-563
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]